(7 nodes) Nectin/Necl trans heterodimerization, and Neurexin/syndecan/glycophorin C network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106563906	Cell adhesion molecule 2-like. (287 aa)
	LOC106603642	Cell adhesion molecule 1-like isoform X1. (443 aa)
	LOC106581539	Cell adhesion molecule 2-like isoform X2. (435 aa)
	LOC106567730	Cell adhesion molecule 1-like isoform X3. (418 aa)
	LOC106576323	Nectin-1-like. (373 aa)
	LOC106581151	Cell adhesion molecule 1-like isoform X1. (421 aa)
	LOC106613023	Cell adhesion molecule 1-like isoform X2. (421 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563906	LOC106567730	ENSSSAP00000011653	ENSSSAP00000070614	Cell adhesion molecule 2-like.	Cell adhesion molecule 1-like isoform X3.	0.683
LOC106563906	LOC106576323	ENSSSAP00000011653	ENSSSAP00000078953	Cell adhesion molecule 2-like.	Nectin-1-like.	0.667
LOC106563906	LOC106581151	ENSSSAP00000011653	ENSSSAP00000079245	Cell adhesion molecule 2-like.	Cell adhesion molecule 1-like isoform X1.	0.683
LOC106563906	LOC106603642	ENSSSAP00000011653	ENSSSAP00000024589	Cell adhesion molecule 2-like.	Cell adhesion molecule 1-like isoform X1.	0.683
LOC106563906	LOC106613023	ENSSSAP00000011653	ENSSSAP00000100727	Cell adhesion molecule 2-like.	Cell adhesion molecule 1-like isoform X2.	0.683
LOC106567730	LOC106563906	ENSSSAP00000070614	ENSSSAP00000011653	Cell adhesion molecule 1-like isoform X3.	Cell adhesion molecule 2-like.	0.683
LOC106567730	LOC106576323	ENSSSAP00000070614	ENSSSAP00000078953	Cell adhesion molecule 1-like isoform X3.	Nectin-1-like.	0.632
LOC106567730	LOC106581151	ENSSSAP00000070614	ENSSSAP00000079245	Cell adhesion molecule 1-like isoform X3.	Cell adhesion molecule 1-like isoform X1.	0.901
LOC106567730	LOC106581539	ENSSSAP00000070614	ENSSSAP00000069637	Cell adhesion molecule 1-like isoform X3.	Cell adhesion molecule 2-like isoform X2.	0.556
LOC106567730	LOC106603642	ENSSSAP00000070614	ENSSSAP00000024589	Cell adhesion molecule 1-like isoform X3.	Cell adhesion molecule 1-like isoform X1.	0.900
LOC106576323	LOC106563906	ENSSSAP00000078953	ENSSSAP00000011653	Nectin-1-like.	Cell adhesion molecule 2-like.	0.667
LOC106576323	LOC106567730	ENSSSAP00000078953	ENSSSAP00000070614	Nectin-1-like.	Cell adhesion molecule 1-like isoform X3.	0.632
LOC106576323	LOC106581151	ENSSSAP00000078953	ENSSSAP00000079245	Nectin-1-like.	Cell adhesion molecule 1-like isoform X1.	0.632
LOC106576323	LOC106581539	ENSSSAP00000078953	ENSSSAP00000069637	Nectin-1-like.	Cell adhesion molecule 2-like isoform X2.	0.547
LOC106576323	LOC106603642	ENSSSAP00000078953	ENSSSAP00000024589	Nectin-1-like.	Cell adhesion molecule 1-like isoform X1.	0.632
LOC106576323	LOC106613023	ENSSSAP00000078953	ENSSSAP00000100727	Nectin-1-like.	Cell adhesion molecule 1-like isoform X2.	0.632
LOC106581151	LOC106563906	ENSSSAP00000079245	ENSSSAP00000011653	Cell adhesion molecule 1-like isoform X1.	Cell adhesion molecule 2-like.	0.683
LOC106581151	LOC106567730	ENSSSAP00000079245	ENSSSAP00000070614	Cell adhesion molecule 1-like isoform X1.	Cell adhesion molecule 1-like isoform X3.	0.901
LOC106581151	LOC106576323	ENSSSAP00000079245	ENSSSAP00000078953	Cell adhesion molecule 1-like isoform X1.	Nectin-1-like.	0.632
LOC106581151	LOC106581539	ENSSSAP00000079245	ENSSSAP00000069637	Cell adhesion molecule 1-like isoform X1.	Cell adhesion molecule 2-like isoform X2.	0.556