(17 nodes) Mixed, incl. Neurogenic differentiation factor, domain of unknown function, and Transdifferentiation network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	znf488	Zinc finger protein 488. (518 aa)
	NEUROD2	Neurogenic differentiation factor. (359 aa)
	lhx1	LIM/homeobox protein Lhx1 isoform X1. (402 aa)
	PAX2	Paired box 2. (133 aa)
	LOC106599594	Pancreas transcription factor 1 subunit alpha-like. (269 aa)
	NEUROD2-2	Neurogenic differentiation factor. (358 aa)
	LOC106579148	Neurogenic differentiation factor 2-like. (438 aa)
	LOC106579536	Class E basic helix-loop-helix protein 22-like. (250 aa)
	NEUROG1	Neurogenin-1-like. (228 aa)
	insm1	Insulinoma-associated protein 1. (472 aa)
	LOC106569290	Pancreas transcription factor 1 subunit alpha. (269 aa)
	LOC106583971	PR domain zinc finger protein 13-like. (631 aa)
	bhlhe22	Class E basic helix-loop-helix protein 22. (234 aa)
	neurod6	Neurogenic differentiation factor 6. (448 aa)
	INSM1	Insulinoma-associated protein 1a-like. (470 aa)
	BHLHE22	Class E basic helix-loop-helix protein 22-like. (226 aa)
	LOC106590392	Class E basic helix-loop-helix protein 22-like. (250 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BHLHE22	INSM1	ENSSSAP00000113836	ENSSSAP00000105223	Class E basic helix-loop-helix protein 22-like.	Insulinoma-associated protein 1a-like.	0.627
BHLHE22	LOC106569290	ENSSSAP00000113836	ENSSSAP00000075548	Class E basic helix-loop-helix protein 22-like.	Pancreas transcription factor 1 subunit alpha.	0.611
BHLHE22	LOC106599594	ENSSSAP00000113836	ENSSSAP00000038718	Class E basic helix-loop-helix protein 22-like.	Pancreas transcription factor 1 subunit alpha-like.	0.611
BHLHE22	PAX2	ENSSSAP00000113836	ENSSSAP00000022373	Class E basic helix-loop-helix protein 22-like.	Paired box 2.	0.407
BHLHE22	insm1	ENSSSAP00000113836	ENSSSAP00000063563	Class E basic helix-loop-helix protein 22-like.	Insulinoma-associated protein 1.	0.627
BHLHE22	lhx1	ENSSSAP00000113836	ENSSSAP00000020430	Class E basic helix-loop-helix protein 22-like.	LIM/homeobox protein Lhx1 isoform X1.	0.491
INSM1	BHLHE22	ENSSSAP00000105223	ENSSSAP00000113836	Insulinoma-associated protein 1a-like.	Class E basic helix-loop-helix protein 22-like.	0.627
INSM1	LOC106569290	ENSSSAP00000105223	ENSSSAP00000075548	Insulinoma-associated protein 1a-like.	Pancreas transcription factor 1 subunit alpha.	0.543
INSM1	LOC106579148	ENSSSAP00000105223	ENSSSAP00000043802	Insulinoma-associated protein 1a-like.	Neurogenic differentiation factor 2-like.	0.578
INSM1	LOC106579536	ENSSSAP00000105223	ENSSSAP00000051004	Insulinoma-associated protein 1a-like.	Class E basic helix-loop-helix protein 22-like.	0.627
INSM1	LOC106590392	ENSSSAP00000105223	ENSSSAP00000118387	Insulinoma-associated protein 1a-like.	Class E basic helix-loop-helix protein 22-like.	0.627
INSM1	LOC106599594	ENSSSAP00000105223	ENSSSAP00000038718	Insulinoma-associated protein 1a-like.	Pancreas transcription factor 1 subunit alpha-like.	0.543
INSM1	NEUROD2	ENSSSAP00000105223	ENSSSAP00000003770	Insulinoma-associated protein 1a-like.	Neurogenic differentiation factor.	0.578
INSM1	NEUROD2-2	ENSSSAP00000105223	ENSSSAP00000042762	Insulinoma-associated protein 1a-like.	Neurogenic differentiation factor.	0.578
INSM1	NEUROG1	ENSSSAP00000105223	ENSSSAP00000062610	Insulinoma-associated protein 1a-like.	Neurogenin-1-like.	0.703
INSM1	bhlhe22	ENSSSAP00000105223	ENSSSAP00000088246	Insulinoma-associated protein 1a-like.	Class E basic helix-loop-helix protein 22.	0.627
INSM1	lhx1	ENSSSAP00000105223	ENSSSAP00000020430	Insulinoma-associated protein 1a-like.	LIM/homeobox protein Lhx1 isoform X1.	0.498
INSM1	neurod6	ENSSSAP00000105223	ENSSSAP00000088941	Insulinoma-associated protein 1a-like.	Neurogenic differentiation factor 6.	0.611
LOC106569290	BHLHE22	ENSSSAP00000075548	ENSSSAP00000113836	Pancreas transcription factor 1 subunit alpha.	Class E basic helix-loop-helix protein 22-like.	0.611
LOC106569290	INSM1	ENSSSAP00000075548	ENSSSAP00000105223	Pancreas transcription factor 1 subunit alpha.	Insulinoma-associated protein 1a-like.	0.543