30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106567323	POU domain protein. (467 aa)
	LOC106610697	Transcription factor SOX. (335 aa)
	LOC100136470	Sox8. (458 aa)
	LOC106572630	Sal-like protein 4 isoform X1. (1092 aa)
	LOC106584342	Transcription factor Sox-2-like. (315 aa)
	LOC106578684	POU domain protein. (717 aa)
	ENSSSAP00000047197	SRY-box transcription factor 11a. (338 aa)
	LOC106567644	Brain-specific homeobox protein homolog. (228 aa)
	LOC106562315	Sal-like protein 1. (1432 aa)
	LOC106608338	Transcription factor Sox-7-like. (455 aa)
	sox14	Transcription factor SOX-14. (235 aa)
	LOC106571484	POU domain protein. (447 aa)
	LOC106571023-2	Transcription factor Sox-7-like. (437 aa)
	LOC106576414	POU domain protein. (890 aa)
	LOC106573257	Sal-like protein 1. (1305 aa)
	ENSSSAP00000074617	Sal-like protein 4. (833 aa)
	LOC106584047	POU domain protein. (440 aa)
	LOC106600289	Sal-like protein 3. (1386 aa)
	LOC106608953	Transcription factor Sox-19b-like. (291 aa)
	LOC106582442	Transcription factor Sox-21-B-like. (241 aa)
	LOC106603680	Brain-specific homeobox protein homolog. (227 aa)
	LOC106588232	Sal-like protein 3. (1266 aa)
	LOC106573232	Paired box protein Pax-6 isoform X6. (461 aa)
	LOC106579626	Homeobox protein koza-like. (383 aa)
	LOC106589333	Transcription factor Sox-8-like. (465 aa)
	LOC106575513	Transcription factor Sox-1b-like. (242 aa)
	LOC106563125	POU domain protein. (508 aa)
	LOC106582022	Transcription factor Sox-1a isoform X1. (309 aa)
	LOC106590258	Homeobox protein Dlx2a-like. (385 aa)
	LOC106586270	Transcription factor Sox-21-B. (243 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000047197	LOC106563125	ENSSSAP00000047197	ENSSSAP00000115688	SRY-box transcription factor 11a.	POU domain protein.	0.756
ENSSSAP00000047197	LOC106567323	ENSSSAP00000047197	ENSSSAP00000007858	SRY-box transcription factor 11a.	POU domain protein.	0.756
ENSSSAP00000047197	LOC106571023-2	ENSSSAP00000047197	ENSSSAP00000059544	SRY-box transcription factor 11a.	Transcription factor Sox-7-like.	0.425
ENSSSAP00000047197	LOC106573232	ENSSSAP00000047197	ENSSSAP00000106673	SRY-box transcription factor 11a.	Paired box protein Pax-6 isoform X6.	0.616
ENSSSAP00000047197	LOC106575513	ENSSSAP00000047197	ENSSSAP00000113727	SRY-box transcription factor 11a.	Transcription factor Sox-1b-like.	0.665
ENSSSAP00000047197	LOC106579626	ENSSSAP00000047197	ENSSSAP00000112665	SRY-box transcription factor 11a.	Homeobox protein koza-like.	0.508
ENSSSAP00000047197	LOC106590258	ENSSSAP00000047197	ENSSSAP00000120069	SRY-box transcription factor 11a.	Homeobox protein Dlx2a-like.	0.508
ENSSSAP00000047197	LOC106608338	ENSSSAP00000047197	ENSSSAP00000055177	SRY-box transcription factor 11a.	Transcription factor Sox-7-like.	0.423
ENSSSAP00000047197	LOC106608953	ENSSSAP00000047197	ENSSSAP00000082937	SRY-box transcription factor 11a.	Transcription factor Sox-19b-like.	0.404
ENSSSAP00000074617	LOC106562315	ENSSSAP00000074617	ENSSSAP00000051909	Sal-like protein 4.	Sal-like protein 1.	0.506
ENSSSAP00000074617	LOC106563125	ENSSSAP00000074617	ENSSSAP00000115688	Sal-like protein 4.	POU domain protein.	0.938
ENSSSAP00000074617	LOC106567323	ENSSSAP00000074617	ENSSSAP00000007858	Sal-like protein 4.	POU domain protein.	0.938
ENSSSAP00000074617	LOC106567644	ENSSSAP00000074617	ENSSSAP00000051370	Sal-like protein 4.	Brain-specific homeobox protein homolog.	0.579
ENSSSAP00000074617	LOC106571484	ENSSSAP00000074617	ENSSSAP00000057066	Sal-like protein 4.	POU domain protein.	0.421
ENSSSAP00000074617	LOC106573257	ENSSSAP00000074617	ENSSSAP00000069557	Sal-like protein 4.	Sal-like protein 1.	0.506
ENSSSAP00000074617	LOC106575513	ENSSSAP00000074617	ENSSSAP00000113727	Sal-like protein 4.	Transcription factor Sox-1b-like.	0.548
ENSSSAP00000074617	LOC106582022	ENSSSAP00000074617	ENSSSAP00000119302	Sal-like protein 4.	Transcription factor Sox-1a isoform X1.	0.548
ENSSSAP00000074617	LOC106584047	ENSSSAP00000074617	ENSSSAP00000078632	Sal-like protein 4.	POU domain protein.	0.421
ENSSSAP00000074617	LOC106584342	ENSSSAP00000074617	ENSSSAP00000033017	Sal-like protein 4.	Transcription factor Sox-2-like.	0.631
ENSSSAP00000074617	LOC106603680	ENSSSAP00000074617	ENSSSAP00000085146	Sal-like protein 4.	Brain-specific homeobox protein homolog.	0.579