(23 nodes) Mixed, incl. CEBP, ZZ domain superfamily, and Regulation of transposition, RNA-mediated network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bic1a	Bicaudal C homolog 1-A. (990 aa)
	LOC106575875	Protein boule-like isoform X2. (348 aa)
	LOC106584061	Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
	LOC106604870	Cytoplasmic polyadenylation element-binding protein 3-like isoform X5. (667 aa)
	LOC106574806	Protein boule-like isoform X3. (396 aa)
	LOC106574800	Protein boule-like. (335 aa)
	LOC106590917	Terminal uridylyltransferase 7-like. (217 aa)
	LOC106560426	Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
	LOC106583270	Protein lin-28 homolog A-like isoform X1. (202 aa)
	LOC106560740	Cytoplasmic polyadenylation element-binding protein 1-A-like. (600 aa)
	LOC106585979	LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
	LOC106581425	p2Y purinoceptor 3-like. (400 aa)
	papd4	poly(A) RNA polymerase GLD2. (471 aa)
	bicc1	Protein bicaudal C homolog 1 isoform X2. (988 aa)
	LOC106560248	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2. (710 aa)
	P2RY6	p2Y purinoceptor 3-like. (375 aa)
	LOC106562788-2	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1. (604 aa)
	ENSSSAP00000095853	annotation not available (287 aa)
	CPEB4	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1. (732 aa)
	LOC106604296	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1. (728 aa)
	LOC106562788	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1. (591 aa)
	CPEB4-2	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1. (726 aa)
	LOC106584219	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2. (687 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPEB4	ENSSSAP00000095853	ENSSSAP00000099197	ENSSSAP00000095853	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	annotation not available	0.440
CPEB4	LOC106581425	ENSSSAP00000099197	ENSSSAP00000074319	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	p2Y purinoceptor 3-like.	0.463
CPEB4	P2RY6	ENSSSAP00000099197	ENSSSAP00000084122	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	p2Y purinoceptor 3-like.	0.463
CPEB4	papd4	ENSSSAP00000099197	ENSSSAP00000076379	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	poly(A) RNA polymerase GLD2.	0.500
CPEB4-2	ENSSSAP00000095853	ENSSSAP00000113930	ENSSSAP00000095853	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	annotation not available	0.440
CPEB4-2	LOC106581425	ENSSSAP00000113930	ENSSSAP00000074319	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	p2Y purinoceptor 3-like.	0.463
CPEB4-2	P2RY6	ENSSSAP00000113930	ENSSSAP00000084122	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	p2Y purinoceptor 3-like.	0.463
CPEB4-2	papd4	ENSSSAP00000113930	ENSSSAP00000076379	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	poly(A) RNA polymerase GLD2.	0.500
ENSSSAP00000095853	CPEB4	ENSSSAP00000095853	ENSSSAP00000099197	annotation not available	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	0.440
ENSSSAP00000095853	CPEB4-2	ENSSSAP00000095853	ENSSSAP00000113930	annotation not available	Cytoplasmic polyadenylation element-binding protein 4-like isoform X1.	0.440
ENSSSAP00000095853	LOC106560248	ENSSSAP00000095853	ENSSSAP00000082151	annotation not available	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2.	0.403
ENSSSAP00000095853	LOC106560740	ENSSSAP00000095853	ENSSSAP00000069170	annotation not available	Cytoplasmic polyadenylation element-binding protein 1-A-like.	0.409
ENSSSAP00000095853	LOC106562788	ENSSSAP00000095853	ENSSSAP00000108000	annotation not available	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1.	0.409
ENSSSAP00000095853	LOC106562788-2	ENSSSAP00000095853	ENSSSAP00000095604	annotation not available	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1.	0.409
ENSSSAP00000095853	LOC106584219	ENSSSAP00000095853	ENSSSAP00000114266	annotation not available	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2.	0.403
ENSSSAP00000095853	papd4	ENSSSAP00000095853	ENSSSAP00000076379	annotation not available	poly(A) RNA polymerase GLD2.	0.451
LOC106560248	ENSSSAP00000095853	ENSSSAP00000082151	ENSSSAP00000095853	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2.	annotation not available	0.403
LOC106560248	papd4	ENSSSAP00000082151	ENSSSAP00000076379	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2.	poly(A) RNA polymerase GLD2.	0.565
LOC106560426	bic1a	ENSSSAP00000045180	ENSSSAP00000003777	Terminal uridylyltransferase 4-like isoform X2.	Bicaudal C homolog 1-A.	0.541
LOC106560426	bicc1	ENSSSAP00000045180	ENSSSAP00000081240	Terminal uridylyltransferase 4-like isoform X2.	Protein bicaudal C homolog 1 isoform X2.	0.541