5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106610435	Polyadenylate-binding protein-interacting protein 2B-like isoform X2. (142 aa)
	LOC106578074	Polyadenylate-binding protein-interacting protein 2B-like isoform X1. (137 aa)
	pai2b	Polyadenylate-binding protein-interacting protein 2B. (138 aa)
	ccdc69	Coiled-coil domain-containing protein 69 isoform X1. (316 aa)
	LOC106604205	Coiled-coil domain-containing protein 69-like isoform X4. (307 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106604205	LOC106610435	ENSSSAP00000076681	ENSSSAP00000006804	Coiled-coil domain-containing protein 69-like isoform X4.	Polyadenylate-binding protein-interacting protein 2B-like isoform X2.	0.443
LOC106604205	pai2b	ENSSSAP00000076681	ENSSSAP00000042178	Coiled-coil domain-containing protein 69-like isoform X4.	Polyadenylate-binding protein-interacting protein 2B.	0.443
LOC106610435	LOC106604205	ENSSSAP00000006804	ENSSSAP00000076681	Polyadenylate-binding protein-interacting protein 2B-like isoform X2.	Coiled-coil domain-containing protein 69-like isoform X4.	0.443
LOC106610435	ccdc69	ENSSSAP00000006804	ENSSSAP00000060749	Polyadenylate-binding protein-interacting protein 2B-like isoform X2.	Coiled-coil domain-containing protein 69 isoform X1.	0.443
ccdc69	LOC106610435	ENSSSAP00000060749	ENSSSAP00000006804	Coiled-coil domain-containing protein 69 isoform X1.	Polyadenylate-binding protein-interacting protein 2B-like isoform X2.	0.443
ccdc69	pai2b	ENSSSAP00000060749	ENSSSAP00000042178	Coiled-coil domain-containing protein 69 isoform X1.	Polyadenylate-binding protein-interacting protein 2B.	0.443
pai2b	LOC106604205	ENSSSAP00000042178	ENSSSAP00000076681	Polyadenylate-binding protein-interacting protein 2B.	Coiled-coil domain-containing protein 69-like isoform X4.	0.443
pai2b	ccdc69	ENSSSAP00000042178	ENSSSAP00000060749	Polyadenylate-binding protein-interacting protein 2B.	Coiled-coil domain-containing protein 69 isoform X1.	0.443