(48 nodes) Mixed, incl. Mitochondrial RNA metabolic process, and Single-stranded DNA endodeoxyribonuclease activity network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RNZ2	Zinc phosphodiesterase ELAC protein 2. (903 aa)
	LOC106611374	SRA stem-loop-interacting RNA-binding protein, mitochondrial-like. (101 aa)
	LOC106605422	Protein TBRG4-like. (635 aa)
	ENSSSAP00000015293	annotation not available (92 aa)
	ENSSSAP00000015308	annotation not available (177 aa)
	LOC106584612	Tripartite motif-containing protein 66-like. (352 aa)
	LOC106591776	Endonuclease domain-containing 1 protein-like isoform X1. (325 aa)
	LOC106610789	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (346 aa)
	LOC106584450	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1350 aa)
	tatdn1	Putative deoxyribonuclease TATDN1 isoform X1. (324 aa)
	ngrn	Neugrin isoform X1. (362 aa)
	LOC106579951	Protein TBRG4-like. (633 aa)
	GRSF1	G-rich sequence factor 1. (483 aa)
	ENSSSAP00000039462	Transcription factor A, mitochondrial-like. (269 aa)
	ENSSSAP00000047227	Mitochondrial transcription termination factor 3. (355 aa)
	rmnd1	LOW QUALITY PROTEIN: required for meiotic nuclear division protein 1 homolog. (248 aa)
	LOC106579274	Twinkle protein, mitochondrial-like. (743 aa)
	b4galnt3	Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (1308 aa)
	LOC106597078	Uncharacterized protein LOC106597078. (948 aa)
	elac2	Zinc phosphodiesterase ELAC protein 2. (872 aa)
	tfb2m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (437 aa)
	endog	Endonuclease. (309 aa)
	FAKD1	FAST kinase domain-containing protein 1 isoform X1. (881 aa)
	LOC106589067	Serum response factor-binding protein 1-like. (715 aa)
	LOC106591530	Endonuclease domain-containing 1 protein-like. (305 aa)
	LOC106570479	Transcription termination factor 3, mitochondrial-like isoform X2. (447 aa)
	LOC106589826	ATP-dependent RNA helicase SUPV3L1, mitochondrial-like isoform X1. (778 aa)
	ENSSSAP00000065814	annotation not available (312 aa)
	TFAM	Transcription factor A, mitochondrial-like. (267 aa)
	mterf1	Transcription termination factor 1, mitochondrial. (387 aa)
	fastkd2	FAST kinase domain-containing protein 2. (667 aa)
	ENSSSAP00000070238	annotation not available (108 aa)
	LOC106612443	ATP-dependent RNA helicase SUPV3L1, mitochondrial-like isoform X1. (782 aa)
	LOC106613752	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1339 aa)
	pde11a	Phosphodiesterase. (919 aa)
	LOC106568668	FAST kinase domain-containing protein 3-like isoform X2. (916 aa)
	LOC106611322	Required for meiotic nuclear division protein 1 homolog. (461 aa)
	mterf2	Transcription termination factor 2, mitochondrial. (381 aa)
	ENSSSAP00000093095	annotation not available (250 aa)
	slirp	LOW QUALITY PROTEIN: SRA stem-loop-interacting RNA-binding protein, mitochondrial. (128 aa)
	lrpprc	Leucine-rich PPR motif-containing protein, mitochondrial. (1455 aa)
	exog	Nuclease EXOG, mitochondrial. (367 aa)
	elac1	Zinc phosphodiesterase ELAC protein 1. (370 aa)
	mgme1	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family. (353 aa)
	ptcd2	Pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1. (319 aa)
	LOC106582029	mucin-5AC-like isoform X1. (1165 aa)
	LOC106578552	poly(A) RNA polymerase, mitochondrial-like. (582 aa)
	ENSSSAP00000120677	annotation not available (273 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000015293	ENSSSAP00000015308	ENSSSAP00000015293	ENSSSAP00000015308	annotation not available	annotation not available	0.458
ENSSSAP00000015293	LOC106584450	ENSSSAP00000015293	ENSSSAP00000029252	annotation not available	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.914
ENSSSAP00000015293	LOC106613752	ENSSSAP00000015293	ENSSSAP00000073693	annotation not available	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.914
ENSSSAP00000015293	lrpprc	ENSSSAP00000015293	ENSSSAP00000103650	annotation not available	Leucine-rich PPR motif-containing protein, mitochondrial.	0.461
ENSSSAP00000015293	tfb2m	ENSSSAP00000015293	ENSSSAP00000057304	annotation not available	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.613
ENSSSAP00000015308	ENSSSAP00000015293	ENSSSAP00000015308	ENSSSAP00000015293	annotation not available	annotation not available	0.458
ENSSSAP00000015308	LOC106584450	ENSSSAP00000015308	ENSSSAP00000029252	annotation not available	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.914
ENSSSAP00000015308	LOC106613752	ENSSSAP00000015308	ENSSSAP00000073693	annotation not available	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.914
ENSSSAP00000015308	tfb2m	ENSSSAP00000015308	ENSSSAP00000057304	annotation not available	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.613
ENSSSAP00000039462	ENSSSAP00000047227	ENSSSAP00000039462	ENSSSAP00000047227	Transcription factor A, mitochondrial-like.	Mitochondrial transcription termination factor 3.	0.510
ENSSSAP00000039462	ENSSSAP00000070238	ENSSSAP00000039462	ENSSSAP00000070238	Transcription factor A, mitochondrial-like.	annotation not available	0.582
ENSSSAP00000039462	ENSSSAP00000093095	ENSSSAP00000039462	ENSSSAP00000093095	Transcription factor A, mitochondrial-like.	annotation not available	0.420
ENSSSAP00000039462	LOC106570479	ENSSSAP00000039462	ENSSSAP00000064123	Transcription factor A, mitochondrial-like.	Transcription termination factor 3, mitochondrial-like isoform X2.	0.510
ENSSSAP00000039462	LOC106579274	ENSSSAP00000039462	ENSSSAP00000051640	Transcription factor A, mitochondrial-like.	Twinkle protein, mitochondrial-like.	0.582
ENSSSAP00000039462	LOC106584450	ENSSSAP00000039462	ENSSSAP00000029252	Transcription factor A, mitochondrial-like.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.985
ENSSSAP00000039462	LOC106589067	ENSSSAP00000039462	ENSSSAP00000059328	Transcription factor A, mitochondrial-like.	Serum response factor-binding protein 1-like.	0.726
ENSSSAP00000039462	LOC106610789	ENSSSAP00000039462	ENSSSAP00000023199	Transcription factor A, mitochondrial-like.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.770
ENSSSAP00000039462	LOC106613752	ENSSSAP00000039462	ENSSSAP00000073693	Transcription factor A, mitochondrial-like.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.985
ENSSSAP00000039462	lrpprc	ENSSSAP00000039462	ENSSSAP00000103650	Transcription factor A, mitochondrial-like.	Leucine-rich PPR motif-containing protein, mitochondrial.	0.527
ENSSSAP00000039462	mgme1	ENSSSAP00000039462	ENSSSAP00000110658	Transcription factor A, mitochondrial-like.	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair. Belongs to the MGME1 family.	0.420