30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chst3	Sulfotransferase; Belongs to the sulfotransferase 1 family. (445 aa)
	LOC106562767	Carbohydrate sulfotransferase 15-like. (367 aa)
	chst1	Sulfotransferase; Belongs to the sulfotransferase 1 family. (425 aa)
	LOC106604550	Hexosyltransferase. (571 aa)
	LOC106565240	Carbohydrate sulfotransferase. (341 aa)
	ENSSSAP00000021067	annotation not available (353 aa)
	LOC106592094	Carbohydrate sulfotransferase 15-like. (368 aa)
	LOC106568394	Chondroitin sulfate proteoglycan 4-like. (2276 aa)
	LOC106570919	Chondroitin sulfate proteoglycan 4-like. (2257 aa)
	LOC106587841	Hexosyltransferase. (582 aa)
	LOC106584126	Carbohydrate sulfotransferase. (373 aa)
	LOC106590171	Hexosyltransferase. (771 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2334 aa)
	LOC106561858	Chondroitin sulfate N-acetylgalactosaminyltransferase 1-like. (598 aa)
	cgat2	Hexosyltransferase. (539 aa)
	chst7	Sulfotransferase; Belongs to the sulfotransferase 1 family. (449 aa)
	LOC106597370	Dermatan-sulfate epimerase-like protein. (1192 aa)
	LOC106578673	Hexosyltransferase. (757 aa)
	LOC106581838	Hexosyltransferase. (766 aa)
	chst12	Carbohydrate sulfotransferase. (360 aa)
	LOC106586150	Hexosyltransferase. (763 aa)
	chst1-2	Carbohydrate sulfotransferase 1-like. (425 aa)
	CHST13	Carbohydrate sulfotransferase. (373 aa)
	DSEL	Dermatan-sulfate epimerase-like protein. (1215 aa)
	LOC106578731	Dermatan-sulfate epimerase-like protein. (1220 aa)
	LOC106572736	Carbohydrate sulfotransferase. (340 aa)
	LOC106566982	Carbohydrate sulfotransferase. (340 aa)
	LOC106580571	Hexosyltransferase. (542 aa)
	chsy3	Hexosyltransferase. (820 aa)
	LOC106568408	Hexosyltransferase. (568 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHST13	LOC106562767	ENSSSAP00000085749	ENSSSAP00000002262	Carbohydrate sulfotransferase.	Carbohydrate sulfotransferase 15-like.	0.435
CHST13	LOC106592094	ENSSSAP00000085749	ENSSSAP00000021309	Carbohydrate sulfotransferase.	Carbohydrate sulfotransferase 15-like.	0.507
CHST13	chst1	ENSSSAP00000085749	ENSSSAP00000009620	Carbohydrate sulfotransferase.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.424
CHST13	chst1-2	ENSSSAP00000085749	ENSSSAP00000083874	Carbohydrate sulfotransferase.	Carbohydrate sulfotransferase 1-like.	0.424
CHST13	chst7	ENSSSAP00000085749	ENSSSAP00000057686	Carbohydrate sulfotransferase.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.559
DSEL	LOC106562767	ENSSSAP00000091289	ENSSSAP00000002262	Dermatan-sulfate epimerase-like protein.	Carbohydrate sulfotransferase 15-like.	0.455
DSEL	LOC106592094	ENSSSAP00000091289	ENSSSAP00000021309	Dermatan-sulfate epimerase-like protein.	Carbohydrate sulfotransferase 15-like.	0.508
DSEL	chst1	ENSSSAP00000091289	ENSSSAP00000009620	Dermatan-sulfate epimerase-like protein.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.432
DSEL	chst1-2	ENSSSAP00000091289	ENSSSAP00000083874	Dermatan-sulfate epimerase-like protein.	Carbohydrate sulfotransferase 1-like.	0.432
DSEL	chst12	ENSSSAP00000091289	ENSSSAP00000067668	Dermatan-sulfate epimerase-like protein.	Carbohydrate sulfotransferase.	0.412
DSEL	chst7	ENSSSAP00000091289	ENSSSAP00000057686	Dermatan-sulfate epimerase-like protein.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.511
ENSSSAP00000021067	LOC106561858	ENSSSAP00000021067	ENSSSAP00000039751	annotation not available	Chondroitin sulfate N-acetylgalactosaminyltransferase 1-like.	0.420
ENSSSAP00000021067	LOC106562767	ENSSSAP00000021067	ENSSSAP00000002262	annotation not available	Carbohydrate sulfotransferase 15-like.	0.536
ENSSSAP00000021067	LOC106568408	ENSSSAP00000021067	ENSSSAP00000110518	annotation not available	Hexosyltransferase.	0.420
ENSSSAP00000021067	LOC106580571	ENSSSAP00000021067	ENSSSAP00000100769	annotation not available	Hexosyltransferase.	0.410
ENSSSAP00000021067	LOC106592094	ENSSSAP00000021067	ENSSSAP00000021309	annotation not available	Carbohydrate sulfotransferase 15-like.	0.593
ENSSSAP00000021067	LOC106604550	ENSSSAP00000021067	ENSSSAP00000010775	annotation not available	Hexosyltransferase.	0.485
ENSSSAP00000021067	cgat2	ENSSSAP00000021067	ENSSSAP00000045123	annotation not available	Hexosyltransferase.	0.485
ENSSSAP00000021067	chst7	ENSSSAP00000021067	ENSSSAP00000057686	annotation not available	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.596
LOC106561858	ENSSSAP00000021067	ENSSSAP00000039751	ENSSSAP00000021067	Chondroitin sulfate N-acetylgalactosaminyltransferase 1-like.	annotation not available	0.420