17 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106589484	Protein lin-52 homolog. (115 aa)
	rbbp4	Histone-binding protein RBBP4. (460 aa)
	ENSSSAP00000010093	annotation not available (915 aa)
	LOC106576419	Forkhead box protein M1-like isoform X1. (676 aa)
	LOC106609503	Forkhead box protein M1-like isoform X1. (672 aa)
	LOC106577962	Protein lin-37 homolog. (242 aa)
	ENSSSAP00000027640	annotation not available (121 aa)
	LOC106608031	Protein lin-9 homolog isoform X1. (563 aa)
	LOC106611063	Protein lin-52 homolog. (124 aa)
	LOC106570721	Histone-binding protein RBBP4-like. (466 aa)
	lin37	Salmo salar lin-37 homolog (C. elegans) (lin37), mRNA. (261 aa)
	LOC106560967	Protein lin-54 homolog isoform X1. (545 aa)
	LOC106568323	Protein lin-54 homolog. (789 aa)
	LOC106562309	Protein lin-54 homolog. (782 aa)
	LIN9	Protein lin-9 homolog isoform X1. (530 aa)
	mybl2	Myb-related protein B isoform X2. (645 aa)
	LOC106565720	Myb-related protein B-like. (653 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000010093	ENSSSAP00000027640	ENSSSAP00000010093	ENSSSAP00000027640	annotation not available	annotation not available	0.607
ENSSSAP00000010093	LIN9	ENSSSAP00000010093	ENSSSAP00000101306	annotation not available	Protein lin-9 homolog isoform X1.	0.937
ENSSSAP00000010093	LOC106560967	ENSSSAP00000010093	ENSSSAP00000071834	annotation not available	Protein lin-54 homolog isoform X1.	0.719
ENSSSAP00000010093	LOC106562309	ENSSSAP00000010093	ENSSSAP00000100642	annotation not available	Protein lin-54 homolog.	0.719
ENSSSAP00000010093	LOC106568323	ENSSSAP00000010093	ENSSSAP00000097239	annotation not available	Protein lin-54 homolog.	0.719
ENSSSAP00000010093	LOC106570721	ENSSSAP00000010093	ENSSSAP00000059091	annotation not available	Histone-binding protein RBBP4-like.	0.607
ENSSSAP00000010093	LOC106576419	ENSSSAP00000010093	ENSSSAP00000017554	annotation not available	Forkhead box protein M1-like isoform X1.	0.806
ENSSSAP00000010093	LOC106577962	ENSSSAP00000010093	ENSSSAP00000023763	annotation not available	Protein lin-37 homolog.	0.823
ENSSSAP00000010093	LOC106589484	ENSSSAP00000010093	ENSSSAP00000003695	annotation not available	Protein lin-52 homolog.	0.906
ENSSSAP00000010093	LOC106608031	ENSSSAP00000010093	ENSSSAP00000038011	annotation not available	Protein lin-9 homolog isoform X1.	0.937
ENSSSAP00000010093	LOC106609503	ENSSSAP00000010093	ENSSSAP00000020067	annotation not available	Forkhead box protein M1-like isoform X1.	0.806
ENSSSAP00000010093	LOC106611063	ENSSSAP00000010093	ENSSSAP00000048437	annotation not available	Protein lin-52 homolog.	0.906
ENSSSAP00000010093	lin37	ENSSSAP00000010093	ENSSSAP00000062986	annotation not available	Salmo salar lin-37 homolog (C. elegans) (lin37), mRNA.	0.823
ENSSSAP00000010093	rbbp4	ENSSSAP00000010093	ENSSSAP00000004624	annotation not available	Histone-binding protein RBBP4.	0.607
ENSSSAP00000027640	ENSSSAP00000010093	ENSSSAP00000027640	ENSSSAP00000010093	annotation not available	annotation not available	0.607
ENSSSAP00000027640	LIN9	ENSSSAP00000027640	ENSSSAP00000101306	annotation not available	Protein lin-9 homolog isoform X1.	0.901
ENSSSAP00000027640	LOC106560967	ENSSSAP00000027640	ENSSSAP00000071834	annotation not available	Protein lin-54 homolog isoform X1.	0.855
ENSSSAP00000027640	LOC106562309	ENSSSAP00000027640	ENSSSAP00000100642	annotation not available	Protein lin-54 homolog.	0.855
ENSSSAP00000027640	LOC106565720	ENSSSAP00000027640	ENSSSAP00000119019	annotation not available	Myb-related protein B-like.	0.607
ENSSSAP00000027640	LOC106568323	ENSSSAP00000027640	ENSSSAP00000097239	annotation not available	Protein lin-54 homolog.	0.855