11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106566382	Carbonic anhydrase 6-like; Belongs to the alpha-carbonic anhydrase family. (563 aa)
	LOC106574173	Receptor-transporting protein 2-like. (167 aa)
	rtp3	Receptor-transporting protein 3. (165 aa)
	LOC106588722	Receptor-transporting protein 3-like. (176 aa)
	GNAT2	Guanine nucleotide-binding protein G(T) subunit alpha-2-like isoform X1. (354 aa)
	gpr157	Carbonic anhydrase 6-like. (538 aa)
	LOC106566369	Guanine nucleotide-binding protein G(T) subunit alpha-2-like. (352 aa)
	LOC106565989	Guanine nucleotide-binding protein G(T) subunit alpha-1. (350 aa)
	LOC106570620	Receptor-transporting protein 3-like. (220 aa)
	GNAT2-2	Guanine nucleotide-binding protein G(T) subunit alpha-2-like isoform X1. (352 aa)
	ENSSSAP00000106289	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2. (333 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAT2-2	LOC106565989	ENSSSAP00000089860	ENSSSAP00000038961	Guanine nucleotide-binding protein G(T) subunit alpha-2-like isoform X1.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.405
LOC106565989	GNAT2-2	ENSSSAP00000038961	ENSSSAP00000089860	Guanine nucleotide-binding protein G(T) subunit alpha-1.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like isoform X1.	0.405
LOC106565989	LOC106566369	ENSSSAP00000038961	ENSSSAP00000032080	Guanine nucleotide-binding protein G(T) subunit alpha-1.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.405
LOC106566369	LOC106565989	ENSSSAP00000032080	ENSSSAP00000038961	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.405