81 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106577192	Disks large homolog 5-like isoform X1; Belongs to the MAGUK family. (2067 aa)
	LOC106613304	Disks large homolog 5-like isoform X1. (2062 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106607118	Probable ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (566 aa)
	LOC100380679	Calcineurin subunit B type 1. (185 aa)
	ENSSSAP00000085653	annotation not available (82 aa)
	LOC106573565	Kelch-like protein 23 isoform X1. (559 aa)
	snai2	Zinc finger protein SLUG. (260 aa)
	LOC106569881	Mothers against decapentaplegic homolog. (589 aa)
	LOC106577236	Lysyl oxidase homolog 4-like. (790 aa)
	fgf2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	LOC106582693	Protein FAM208A-like isoform X2. (1220 aa)
	smad4	Mothers against decapentaplegic homolog. (510 aa)
	LOC106605446	Mothers against decapentaplegic homolog. (565 aa)
	LOC106610223	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family. (481 aa)
	SMAD4	Mothers against decapentaplegic homolog. (552 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	akna	AT-hook-containing transcription factor isoform X1. (1557 aa)
	LOC106565838	Kelch repeat and BTB domain-containing protein 8-like isoform X1. (601 aa)
	LOC106578839	Calcineurin subunit B type 1-like. (274 aa)
	PDCD6	Programmed cell death protein 6-like. (203 aa)
	LOC106589953	Nucleolar and coiled-body phosphoprotein 1-like isoform X1. (887 aa)
	LOC106590254	Programmed cell death protein 6-like isoform X2. (242 aa)
	LOC106563948	Mothers against decapentaplegic homolog. (554 aa)
	ENSSSAP00000000912	annotation not available (308 aa)
	loxl4	Lysyl oxidase homolog 4. (778 aa)
	LOC106612874	Lysyl oxidase homolog 3-like. (412 aa)
	LOC106581041	Filamin-interacting protein FAM101B-like. (203 aa)
	LOC106588319	Mothers against decapentaplegic homolog. (587 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	LOC106583593	Homeobox protein XHOX-7.1-like. (283 aa)
	LOC106588172	ephrin-A1-like; Belongs to the ephrin family. (221 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	LOC106586010	Calcineurin subunit B type 1. (196 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	lef1	Lymphoid enhancer-binding factor 1 isoform X5. (408 aa)
	LOC106574320	ephrin-A1-like; Belongs to the ephrin family. (260 aa)
	DDX5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (659 aa)
	LOC106609305	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	LOC106567202	Kelch-like protein 12 isoform X1. (570 aa)
	LOC106580167	Mothers against decapentaplegic homolog. (579 aa)
	LOC106607025	Transforming growth factor beta receptor type 3-like isoform X1. (845 aa)
	LOC106578207	Endothelin-1 receptor-like. (222 aa)
	KLHL12	Kelch-like protein 12 isoform X1. (571 aa)
	LOC106565999	High mobility group protein HMGI-C-like. (87 aa)
	LOC106565204	Homeobox protein XHOX-7.1-like. (282 aa)
	LOC106578809	Nucleolar and coiled-body phosphoprotein 1-like isoform X1. (1106 aa)
	pef1	Peflin isoform X1. (308 aa)
	SNAI2	Zinc finger protein SNAI2-like. (260 aa)
	tgfbr3	Transforming growth factor beta receptor type 3. (871 aa)
	LOC106566602	Protein FAM208A-like isoform X1. (1995 aa)
	ENSSSAP00000021835	annotation not available (175 aa)
	LOC106584159	Transforming growth factor beta receptor type 3-like. (883 aa)
	LOC106570392	Endothelin-1-like. (203 aa)
	ENSSSAP00000018015	annotation not available (179 aa)
	LOC106564338	Lysyl oxidase homolog 4-like. (573 aa)
	ENSSSAP00000017280	annotation not available (634 aa)
	LOC106566086	Protein FAM208A-like isoform X1. (2272 aa)
	ENSSSAP00000014056	annotation not available (335 aa)
	LOC106570105	ephrin-A1-like; Belongs to the ephrin family. (225 aa)
	LOC106604591	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	LOC106604409	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (361 aa)
	LOC106604410	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
	TMEM100	Transmembrane protein 100-like. (143 aa)
	tm100	Transmembrane protein 100. (143 aa)
	LOC106601225	Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family. (631 aa)
	LOXL4	Lysyl oxidase homolog 4-like. (860 aa)
	LOC106601397	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family. (634 aa)
	LOC106571843	Protein FAM208A-like isoform X1. (1545 aa)
	LOC106582740	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (383 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	LOC106568180	Mothers against decapentaplegic homolog. (548 aa)
	LOC106566047	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (389 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106583033	Kelch repeat and BTB domain-containing protein 8 isoform X1. (616 aa)
	LOC106589028	Uncharacterized protein LOC106589028. (275 aa)
	LOC106576171	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	ENSSSAP00000079172	annotation not available (96 aa)
	LOC106601339	Transforming growth factor beta receptor type 3-like. (688 aa)
	rflnb	FAM101B. (203 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSSSAP00000018015	ENSSSAP00000044729	ENSSSAP00000018015	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	annotation not available	0.688
DDX5	LOC106578809	ENSSSAP00000044729	ENSSSAP00000033975	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
DDX5	LOC106589953	ENSSSAP00000044729	ENSSSAP00000112780	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
DDX5	LOC106601397	ENSSSAP00000044729	ENSSSAP00000001672	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.901
DDX5	polr1b	ENSSSAP00000044729	ENSSSAP00000055725	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.688
ENSSSAP00000014056	ENSSSAP00000018015	ENSSSAP00000014056	ENSSSAP00000018015	annotation not available	annotation not available	0.688
ENSSSAP00000014056	LOC106578809	ENSSSAP00000014056	ENSSSAP00000033975	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
ENSSSAP00000014056	LOC106589953	ENSSSAP00000014056	ENSSSAP00000112780	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
ENSSSAP00000014056	polr1b	ENSSSAP00000014056	ENSSSAP00000055725	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.688
ENSSSAP00000017280	ENSSSAP00000018015	ENSSSAP00000017280	ENSSSAP00000018015	annotation not available	annotation not available	0.688
ENSSSAP00000017280	LOC106578809	ENSSSAP00000017280	ENSSSAP00000033975	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
ENSSSAP00000017280	LOC106589953	ENSSSAP00000017280	ENSSSAP00000112780	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.436
ENSSSAP00000017280	polr1b	ENSSSAP00000017280	ENSSSAP00000055725	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.688
ENSSSAP00000018015	DDX5	ENSSSAP00000018015	ENSSSAP00000044729	annotation not available	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.688
ENSSSAP00000018015	ENSSSAP00000014056	ENSSSAP00000018015	ENSSSAP00000014056	annotation not available	annotation not available	0.688
ENSSSAP00000018015	ENSSSAP00000017280	ENSSSAP00000018015	ENSSSAP00000017280	annotation not available	annotation not available	0.688
ENSSSAP00000018015	LOC106578809	ENSSSAP00000018015	ENSSSAP00000033975	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.869
ENSSSAP00000018015	LOC106589953	ENSSSAP00000018015	ENSSSAP00000112780	annotation not available	Nucleolar and coiled-body phosphoprotein 1-like isoform X1.	0.869
ENSSSAP00000018015	LOC106601225	ENSSSAP00000018015	ENSSSAP00000002569	annotation not available	Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family.	0.688
ENSSSAP00000018015	LOC106601397	ENSSSAP00000018015	ENSSSAP00000001672	annotation not available	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.688