15 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106604332	Beta-2 adrenergic receptor-like. (434 aa)
	LOC106583505	Contactin-2-like. (1138 aa)
	LOC106589804	GDNF family receptor alpha-like. (533 aa)
	LOC106599003	Growth/differentiation factor 15-like. (379 aa)
	LOC106569003	Transforming growth factor beta-1-like. (379 aa)
	LOC106577610	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X6. (1019 aa)
	LOC106567434	Beta-2 adrenergic receptor. (411 aa)
	sorl1	Sortilin-related receptor isoform X1. (2203 aa)
	LOC106608616	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X7. (872 aa)
	ADRB2	Beta-2 adrenergic receptor-like. (407 aa)
	LOC106612559	LOW QUALITY PROTEIN: sortilin-related receptor-like. (2203 aa)
	LOC106565094	Contactin-2-like. (1043 aa)
	ENSSSAP00000054429	Prolactin releasing hormone. (89 aa)
	oma1	Metalloendopeptidase OMA1, mitochondrial isoform X1. (554 aa)
	LOC106612164	Beta-2 adrenergic receptor-like. (430 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106565094	LOC106583505	ENSSSAP00000055549	ENSSSAP00000118144	Contactin-2-like.	Contactin-2-like.	0.900
LOC106569003	LOC106589804	ENSSSAP00000097099	ENSSSAP00000113999	Transforming growth factor beta-1-like.	GDNF family receptor alpha-like.	0.965
LOC106569003	LOC106599003	ENSSSAP00000097099	ENSSSAP00000106967	Transforming growth factor beta-1-like.	Growth/differentiation factor 15-like.	0.901
LOC106583505	LOC106565094	ENSSSAP00000118144	ENSSSAP00000055549	Contactin-2-like.	Contactin-2-like.	0.900
LOC106589804	LOC106569003	ENSSSAP00000113999	ENSSSAP00000097099	GDNF family receptor alpha-like.	Transforming growth factor beta-1-like.	0.965
LOC106589804	LOC106599003	ENSSSAP00000113999	ENSSSAP00000106967	GDNF family receptor alpha-like.	Growth/differentiation factor 15-like.	0.965
LOC106599003	LOC106569003	ENSSSAP00000106967	ENSSSAP00000097099	Growth/differentiation factor 15-like.	Transforming growth factor beta-1-like.	0.901
LOC106599003	LOC106589804	ENSSSAP00000106967	ENSSSAP00000113999	Growth/differentiation factor 15-like.	GDNF family receptor alpha-like.	0.965