9 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HAND1	Heart- and neural crest derivatives-expressed protein 1-like. (189 aa)
	LOC106578207	Endothelin-1 receptor-like. (222 aa)
	LOC106566939	T-box transcription factor TBX5-A-like. (524 aa)
	LOC106612166	Homeobox protein Nkx-2.5-like. (315 aa)
	LOC106563286	T-box transcription factor TBX5-A-like. (524 aa)
	LOC106573785	Uncharacterized protein LOC106573785. (279 aa)
	ENSSSAP00000087878	annotation not available (188 aa)
	LOC106610223	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family. (481 aa)
	LOC106604305	Homeobox protein Nkx-2.5-like. (315 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000087878	LOC106604305	ENSSSAP00000087878	ENSSSAP00000106523	annotation not available	Homeobox protein Nkx-2.5-like.	0.480
ENSSSAP00000087878	LOC106612166	ENSSSAP00000087878	ENSSSAP00000042232	annotation not available	Homeobox protein Nkx-2.5-like.	0.480
HAND1	LOC106604305	ENSSSAP00000074250	ENSSSAP00000106523	Heart- and neural crest derivatives-expressed protein 1-like.	Homeobox protein Nkx-2.5-like.	0.480
HAND1	LOC106612166	ENSSSAP00000074250	ENSSSAP00000042232	Heart- and neural crest derivatives-expressed protein 1-like.	Homeobox protein Nkx-2.5-like.	0.480
LOC106563286	LOC106604305	ENSSSAP00000051935	ENSSSAP00000106523	T-box transcription factor TBX5-A-like.	Homeobox protein Nkx-2.5-like.	0.851
LOC106563286	LOC106612166	ENSSSAP00000051935	ENSSSAP00000042232	T-box transcription factor TBX5-A-like.	Homeobox protein Nkx-2.5-like.	0.851
LOC106566939	LOC106604305	ENSSSAP00000041663	ENSSSAP00000106523	T-box transcription factor TBX5-A-like.	Homeobox protein Nkx-2.5-like.	0.851
LOC106566939	LOC106612166	ENSSSAP00000041663	ENSSSAP00000042232	T-box transcription factor TBX5-A-like.	Homeobox protein Nkx-2.5-like.	0.851
LOC106573785	LOC106604305	ENSSSAP00000062244	ENSSSAP00000106523	Uncharacterized protein LOC106573785.	Homeobox protein Nkx-2.5-like.	0.520
LOC106573785	LOC106612166	ENSSSAP00000062244	ENSSSAP00000042232	Uncharacterized protein LOC106573785.	Homeobox protein Nkx-2.5-like.	0.520
LOC106604305	ENSSSAP00000087878	ENSSSAP00000106523	ENSSSAP00000087878	Homeobox protein Nkx-2.5-like.	annotation not available	0.480
LOC106604305	HAND1	ENSSSAP00000106523	ENSSSAP00000074250	Homeobox protein Nkx-2.5-like.	Heart- and neural crest derivatives-expressed protein 1-like.	0.480
LOC106604305	LOC106563286	ENSSSAP00000106523	ENSSSAP00000051935	Homeobox protein Nkx-2.5-like.	T-box transcription factor TBX5-A-like.	0.851
LOC106604305	LOC106566939	ENSSSAP00000106523	ENSSSAP00000041663	Homeobox protein Nkx-2.5-like.	T-box transcription factor TBX5-A-like.	0.851
LOC106604305	LOC106573785	ENSSSAP00000106523	ENSSSAP00000062244	Homeobox protein Nkx-2.5-like.	Uncharacterized protein LOC106573785.	0.520
LOC106612166	ENSSSAP00000087878	ENSSSAP00000042232	ENSSSAP00000087878	Homeobox protein Nkx-2.5-like.	annotation not available	0.480
LOC106612166	HAND1	ENSSSAP00000042232	ENSSSAP00000074250	Homeobox protein Nkx-2.5-like.	Heart- and neural crest derivatives-expressed protein 1-like.	0.480
LOC106612166	LOC106563286	ENSSSAP00000042232	ENSSSAP00000051935	Homeobox protein Nkx-2.5-like.	T-box transcription factor TBX5-A-like.	0.851
LOC106612166	LOC106566939	ENSSSAP00000042232	ENSSSAP00000041663	Homeobox protein Nkx-2.5-like.	T-box transcription factor TBX5-A-like.	0.851
LOC106612166	LOC106573785	ENSSSAP00000042232	ENSSSAP00000062244	Homeobox protein Nkx-2.5-like.	Uncharacterized protein LOC106573785.	0.520