STRINGSTRING
LOC106606488 LOC106606488 LOC106591641 LOC106591641 ku70 ku70 LOC106608924 LOC106608924 xpp3 xpp3 ENSSSAP00000005631 ENSSSAP00000005631 rd23a rd23a LOC106613684 LOC106613684 LOC106576591 LOC106576591 LOC106576591-2 LOC106576591-2 LOC106564464 LOC106564464 neil1 neil1 neil1-2 neil1-2 ENSSSAP00000019926 ENSSSAP00000019926 LOC106589530 LOC106589530 ENSSSAP00000025590 ENSSSAP00000025590 recql4 recql4 ENSSSAP00000027531 ENSSSAP00000027531 LOC106601920 LOC106601920 wrn wrn ercc4 ercc4 poli poli msh6 msh6 LOC106579757 LOC106579757 LOC106590442 LOC106590442 DPOD1 DPOD1 LOC106562517 LOC106562517 RAD23B RAD23B rfa1 rfa1 apex1 apex1 LOC106579778 LOC106579778 LOC106605164 LOC106605164 ENSSSAP00000059858 ENSSSAP00000059858 LOC106586740 LOC106586740 LOC106612933 LOC106612933 ercc2 ercc2 dclre1b dclre1b xpa xpa ung ung ENSSSAP00000074515 ENSSSAP00000074515 LOC106561926 LOC106561926 LOC106580482 LOC106580482 ENSSSAP00000079966 ENSSSAP00000079966 LOC106607167 LOC106607167 xpc xpc LOC106582635 LOC106582635 dclre1a dclre1a LOC106601193-2 LOC106601193-2 LOC106601193 LOC106601193 rpa3 rpa3 poli-2 poli-2 LOC106596053 LOC106596053 cry1 cry1 LOC106590210 LOC106590210 pot1 pot1 LOC106573817 LOC106573817 LOC106570310 LOC106570310 ddb2 ddb2 ddb1 ddb1 msh2 msh2 fancg fancg neil3 neil3 xpa-2 xpa-2 mutyh mutyh ercc1 ercc1 ENSSSAP00000104950 ENSSSAP00000104950 brca1 brca1 LOC106573292 LOC106573292 blm blm polh polh ogg1 ogg1 LOC106603393 LOC106603393 ENSSSAP00000114968 ENSSSAP00000114968 ENSSSAP00000115468 ENSSSAP00000115468 sirt6 sirt6 rev1 rev1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC106606488LOW QUALITY PROTEIN: CREB-binding protein-like. (2296 aa)
LOC106591641Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (359 aa)
ku70ATP-dependent DNA helicase 2 subunit 1 isoform X1. (619 aa)
LOC106608924Histone acetyltransferase p300-like isoform X2. (2752 aa)
xpp3Histone acetyltransferase p300-like isoform X8. (2344 aa)
ENSSSAP00000005631annotation not available (94 aa)
rd23aUV excision repair protein RAD23 homolog A. (387 aa)
LOC106613684UV excision repair protein RAD23 homolog B-like. (478 aa)
LOC106576591DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (342 aa)
LOC106576591-2DNA-(apurinic or apyrimidinic site) lyase-like. (342 aa)
LOC106564464CREB-binding protein-like isoform X6. (2486 aa)
neil1Endonuclease 8-like 1 isoform X2. (421 aa)
neil1-2Endonuclease 8-like 1 isoform X1. (151 aa)
ENSSSAP00000019926annotation not available (202 aa)
LOC106589530CREB-binding protein-like isoform X4. (2921 aa)
ENSSSAP00000025590annotation not available (47 aa)
recql4ATP-dependent DNA helicase Q4. (1404 aa)
ENSSSAP00000027531annotation not available (47 aa)
LOC106601920DNA polymerase delta catalytic subunit-like. (681 aa)
wrnWerner syndrome ATP-dependent helicase isoform X2. (1467 aa)
ercc4DNA repair endonuclease XPF. (911 aa)
poliDNA polymerase iota-like isoform X1. (761 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1386 aa)
LOC106579757Cryptochrome DASH-like. (478 aa)
LOC106590442CREB-binding protein-like isoform X1. (2411 aa)
DPOD1DNA polymerase. (899 aa)
LOC106562517Tumor suppressor p53-binding protein 1-like isoform X3. (1923 aa)
RAD23BUV excision repair protein RAD23 homolog B-like isoform X1. (375 aa)
rfa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
apex1Salmo salar APEX nuclease (multifunctional DNA repair enzyme) 1 (apex1), mRNA. (344 aa)
LOC106579778Cryptochrome DASH-like. (142 aa)
LOC106605164DNA repair protein XRCC1-like. (989 aa)
ENSSSAP00000059858annotation not available (300 aa)
LOC106586740DNA repair protein REV1-like. (1613 aa)
LOC106612933Replication protein A 70 kDa DNA-binding subunit-like. (632 aa)
ercc2TFIIH basal transcription factor complex helicase subunit. (849 aa)
dclre1b5' exonuclease Apollo isoform X1. (704 aa)
xpaDNA-repair protein complementing XP-A cells homolog. (274 aa)
ungUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (64 aa)
ENSSSAP00000074515Excision repair cross-complementation group 2. (324 aa)
LOC106561926DNA damage-binding protein 1-like isoform X1. (1139 aa)
LOC106580482DNA polymerase kappa-like. (790 aa)
ENSSSAP00000079966annotation not available (1325 aa)
LOC106607167Histone acetyltransferase p300-like isoform X9. (2695 aa)
xpcDNA repair protein complementing XP-C cells. (905 aa)
LOC106582635DNA repair protein XRCC1-like. (633 aa)
dclre1aDNA cross-link repair 1A protein. (898 aa)
LOC106601193-2UV excision repair protein RAD23 homolog A-like isoform X1. (373 aa)
LOC106601193UV excision repair protein RAD23 homolog A-like. (381 aa)
rpa3Replication protein A3. (159 aa)
poli-2Salmo salar polymerase (DNA directed) iota (poli), mRNA. (761 aa)
LOC106596053UV excision repair protein RAD23 homolog A-like. (130 aa)
cry1Cryptochrome-1. (611 aa)
LOC106590210DNA endonuclease RBBP8-like. (723 aa)
pot1Protection of telomeres protein 1 isoform X1. (838 aa)
LOC106573817UV excision repair protein RAD23 homolog B-like isoform X1. (468 aa)
LOC106570310Replication protein A 14 kDa subunit-like. (147 aa)
ddb2DNA damage-binding protein 2. (329 aa)
ddb1Salmo salar DNA damage-binding protein 1 (ddb1), mRNA. (1244 aa)
msh2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (928 aa)
fancgFanconi anemia group G protein isoform X3. (449 aa)
neil3Endonuclease 8-like 3. (589 aa)
xpa-2DNA repair protein complementing XP-A cells. (278 aa)
mutyhAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (523 aa)
ercc1DNA excision repair protein ERCC-1. (383 aa)
ENSSSAP00000104950Polymerase (DNA directed) kappa. (401 aa)
brca1Breast cancer type 1 susceptibility protein isoform X2. (1567 aa)
LOC106573292Cryptochrome-1-like. (686 aa)
blmBloom syndrome protein isoform X1. (1471 aa)
polhDNA polymerase eta. (782 aa)
ogg1N-glycosylase/DNA lyase isoform X1. (440 aa)
LOC106603393Short transient receptor potential channel 2-like. (448 aa)
ENSSSAP00000114968annotation not available (273 aa)
ENSSSAP00000115468X-ray repair complementing defective repair in Chinese hamster cells 6. (364 aa)
sirt6NAD-dependent protein deacetylase sirtuin-6 isoform X1. (383 aa)
rev1DNA repair protein REV1. (1451 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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