38 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106580058	Transmembrane protein 2-like. (1408 aa)
	LOC106576126	Hyaluronidase. (1095 aa)
	LOC106585357	Transmembrane protein 2-like. (1409 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC106561029	Hyaluronidase. (512 aa)
	SPAM1-2	Hyaluronidase. (464 aa)
	sphm	N-sulphoglucosamine sulphohydrolase precursor. (537 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	ENSSSAP00000008515	annotation not available (137 aa)
	LOC106587409	Lysozyme g. (208 aa)
	LOC106587400	Lysozyme G-like. (176 aa)
	ENSSSAP00000018027	N-sulfoglucosamine sulfohydrolase (sulfamidase). (298 aa)
	CEMIP	Cell migration-inducing and hyaluronan-binding protein. (1013 aa)
	LOC106566776	Hyaluronidase. (437 aa)
	LOC106565981	Hyaluronidase. (474 aa)
	LOC106565982	Hyaluronidase. (444 aa)
	HYAL2	Hyaluronidase. (478 aa)
	LOC106564995	Lysozyme g. (190 aa)
	LOC106607020	N-acetylmuramoyl-L-alanine amidase-like. (492 aa)
	LOC106601345	N-acetylmuramoyl-L-alanine amidase-like. (492 aa)
	ENSSSAP00000045039	annotation not available (114 aa)
	ENSSSAP00000045045	annotation not available (326 aa)
	ENSSSAP00000045356	Peptidoglycan recognition protein 5. (167 aa)
	ENSSSAP00000047204	annotation not available (166 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	ENSSSAP00000055287	Iduronate 2-sulfatase. (419 aa)
	LOC106564993	N-acetylmuramoyl-L-alanine amidase-like. (521 aa)
	ENSSSAP00000061842	annotation not available (174 aa)
	ids	Iduronate 2-sulfatase isoform X1. (557 aa)
	LOC106585357-2	Transmembrane protein 2-like. (1409 aa)
	idua	alpha-L-iduronidase isoform X1. (832 aa)
	lyg	Lysozyme g. (316 aa)
	LOC106583436	Hyaluronidase. (478 aa)
	polr2i	DNA-directed RNA polymerase II subunit RPB9 isoform X1. (168 aa)
	LOC106561028	Hyaluronidase. (492 aa)
	LOC106584561	Hyaluronidase. (505 aa)
	SPAM1	Hyaluronidase. (478 aa)
	HYAL2-2	Hyaluronidase. (472 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEMIP	HYAL2	ENSSSAP00000018328	ENSSSAP00000033747	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	HYAL2-2	ENSSSAP00000018328	ENSSSAP00000095248	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106561029	ENSSSAP00000018328	ENSSSAP00000110362	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
CEMIP	LOC106565981	ENSSSAP00000018328	ENSSSAP00000030943	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106565982	ENSSSAP00000018328	ENSSSAP00000030960	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.671
CEMIP	LOC106583436	ENSSSAP00000018328	ENSSSAP00000077066	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106584561	ENSSSAP00000018328	ENSSSAP00000094469	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
ENSSSAP00000008515	ENSSSAP00000061842	ENSSSAP00000008515	ENSSSAP00000061842	annotation not available	annotation not available	0.447
ENSSSAP00000018027	ENSSSAP00000055287	ENSSSAP00000018027	ENSSSAP00000055287	N-sulfoglucosamine sulfohydrolase (sulfamidase).	Iduronate 2-sulfatase.	0.528
ENSSSAP00000018027	ids	ENSSSAP00000018027	ENSSSAP00000063177	N-sulfoglucosamine sulfohydrolase (sulfamidase).	Iduronate 2-sulfatase isoform X1.	0.550
ENSSSAP00000018027	idua	ENSSSAP00000018027	ENSSSAP00000068835	N-sulfoglucosamine sulfohydrolase (sulfamidase).	alpha-L-iduronidase isoform X1.	0.502
ENSSSAP00000045039	ENSSSAP00000045356	ENSSSAP00000045039	ENSSSAP00000045356	annotation not available	Peptidoglycan recognition protein 5.	0.400
ENSSSAP00000045356	ENSSSAP00000045039	ENSSSAP00000045356	ENSSSAP00000045039	Peptidoglycan recognition protein 5.	annotation not available	0.400
ENSSSAP00000055287	ENSSSAP00000018027	ENSSSAP00000055287	ENSSSAP00000018027	Iduronate 2-sulfatase.	N-sulfoglucosamine sulfohydrolase (sulfamidase).	0.528
ENSSSAP00000055287	LOC106601345	ENSSSAP00000055287	ENSSSAP00000043717	Iduronate 2-sulfatase.	N-acetylmuramoyl-L-alanine amidase-like.	0.474
ENSSSAP00000055287	LOC106607020	ENSSSAP00000055287	ENSSSAP00000043558	Iduronate 2-sulfatase.	N-acetylmuramoyl-L-alanine amidase-like.	0.474
ENSSSAP00000055287	idua	ENSSSAP00000055287	ENSSSAP00000068835	Iduronate 2-sulfatase.	alpha-L-iduronidase isoform X1.	0.591
ENSSSAP00000055287	sphm	ENSSSAP00000055287	ENSSSAP00000001603	Iduronate 2-sulfatase.	N-sulphoglucosamine sulphohydrolase precursor.	0.561
ENSSSAP00000061842	ENSSSAP00000008515	ENSSSAP00000061842	ENSSSAP00000008515	annotation not available	annotation not available	0.447
ENSSSAP00000061842	LOC106587400	ENSSSAP00000061842	ENSSSAP00000008556	annotation not available	Lysozyme G-like.	0.475