28 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106585901	Uncharacterized protein LOC106585901. (207 aa)
	sirt6	NAD-dependent protein deacetylase sirtuin-6 isoform X1. (383 aa)
	HTR2A-2	5-hydroxytryptamine receptor 2A. (508 aa)
	ENSSSAP00000114968	annotation not available (273 aa)
	LOC106568674	Non-specific serine/threonine protein kinase. (1367 aa)
	LOC106579964	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (569 aa)
	prxl2c	Thioredoxin-like protein AAED1. (224 aa)
	prkaa1	Non-specific serine/threonine protein kinase. (583 aa)
	LOC106585461	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. Belongs to the P2X receptor family. (610 aa)
	LOC106604253	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform X8. (1065 aa)
	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4. (1072 aa)
	LOC106607167	Histone acetyltransferase p300-like isoform X9. (2695 aa)
	LOC106560227	Non-specific serine/threonine protein kinase. (583 aa)
	ENSSSAP00000073313	annotation not available (76 aa)
	HTR2A	5-hydroxytryptamine receptor 2A-like. (511 aa)
	prkaa2	Non-specific serine/threonine protein kinase. (615 aa)
	LOC100136517	Insulin-like growth factor I isoform X1. (198 aa)
	cl005	Salmo salar CL005 protein (cl005), mRNA. (293 aa)
	LOC106609475	Insulin-like growth factor I isoform X1. (211 aa)
	arl2	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	LOC106601894	jmjC domain-containing protein 8-like. (295 aa)
	LOC106589530	CREB-binding protein-like isoform X4. (2921 aa)
	LOC106577129	Folliculin-like. (566 aa)
	ENSSSAP00000010011	Folliculin. (566 aa)
	ENSSSAP00000009040	annotation not available (194 aa)
	xpp3	Histone acetyltransferase p300-like isoform X8. (2344 aa)
	LOC106609462	Fructose-2,6-bisphosphatase TIGAR B-like. (271 aa)
	LOC106608924	Histone acetyltransferase p300-like isoform X2. (2752 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106589530	LOC106607167	ENSSSAP00000020738	ENSSSAP00000081005	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X9.	0.901
LOC106589530	xpp3	ENSSSAP00000020738	ENSSSAP00000005298	CREB-binding protein-like isoform X4.	Histone acetyltransferase p300-like isoform X8.	0.901
LOC106607167	LOC106589530	ENSSSAP00000081005	ENSSSAP00000020738	Histone acetyltransferase p300-like isoform X9.	CREB-binding protein-like isoform X4.	0.901
LOC106607167	xpp3	ENSSSAP00000081005	ENSSSAP00000005298	Histone acetyltransferase p300-like isoform X9.	Histone acetyltransferase p300-like isoform X8.	0.900
xpp3	LOC106589530	ENSSSAP00000005298	ENSSSAP00000020738	Histone acetyltransferase p300-like isoform X8.	CREB-binding protein-like isoform X4.	0.901
xpp3	LOC106607167	ENSSSAP00000005298	ENSSSAP00000081005	Histone acetyltransferase p300-like isoform X8.	Histone acetyltransferase p300-like isoform X9.	0.900