7 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106584663	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (457 aa)
	LOC106591641	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (359 aa)
	LOC106564287	Endonuclease III-like protein 1. (207 aa)
	LOC106584662	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (436 aa)
	LOC106561087	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (467 aa)
	ung	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (64 aa)
	ogg1	N-glycosylase/DNA lyase isoform X1. (440 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561087	LOC106564287	ENSSSAP00000029042	ENSSSAP00000012218	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Endonuclease III-like protein 1.	0.511
LOC106561087	LOC106584662	ENSSSAP00000029042	ENSSSAP00000019635	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.900
LOC106561087	LOC106584663	ENSSSAP00000029042	ENSSSAP00000019574	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.903
LOC106561087	LOC106591641	ENSSSAP00000029042	ENSSSAP00000001027	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.572
LOC106561087	ogg1	ENSSSAP00000029042	ENSSSAP00000112193	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	N-glycosylase/DNA lyase isoform X1.	0.598
LOC106561087	ung	ENSSSAP00000029042	ENSSSAP00000074402	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.598
LOC106564287	LOC106561087	ENSSSAP00000012218	ENSSSAP00000029042	Endonuclease III-like protein 1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.511
LOC106564287	LOC106584662	ENSSSAP00000012218	ENSSSAP00000019635	Endonuclease III-like protein 1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.511
LOC106564287	LOC106584663	ENSSSAP00000012218	ENSSSAP00000019574	Endonuclease III-like protein 1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.511
LOC106564287	LOC106591641	ENSSSAP00000012218	ENSSSAP00000001027	Endonuclease III-like protein 1.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.902
LOC106564287	ogg1	ENSSSAP00000012218	ENSSSAP00000112193	Endonuclease III-like protein 1.	N-glycosylase/DNA lyase isoform X1.	0.707
LOC106564287	ung	ENSSSAP00000012218	ENSSSAP00000074402	Endonuclease III-like protein 1.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.635
LOC106584662	LOC106561087	ENSSSAP00000019635	ENSSSAP00000029042	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.900
LOC106584662	LOC106564287	ENSSSAP00000019635	ENSSSAP00000012218	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Endonuclease III-like protein 1.	0.511
LOC106584662	LOC106584663	ENSSSAP00000019635	ENSSSAP00000019574	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.903
LOC106584662	LOC106591641	ENSSSAP00000019635	ENSSSAP00000001027	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.	0.572
LOC106584662	ogg1	ENSSSAP00000019635	ENSSSAP00000112193	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	N-glycosylase/DNA lyase isoform X1.	0.598
LOC106584662	ung	ENSSSAP00000019635	ENSSSAP00000074402	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.598
LOC106584663	LOC106561087	ENSSSAP00000019574	ENSSSAP00000029042	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	0.903
LOC106584663	LOC106564287	ENSSSAP00000019574	ENSSSAP00000012218	G/T mismatch-specific thymine DNA glycosylase-like isoform X1.	Endonuclease III-like protein 1.	0.511