18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000007566	General transcription factor IIA, 1-like. (712 aa)
	LOC106568394	Chondroitin sulfate proteoglycan 4-like. (2276 aa)
	LOC106590027	Neuropilin; Belongs to the neuropilin family. (927 aa)
	LOC106570919	Chondroitin sulfate proteoglycan 4-like. (2257 aa)
	LOC106574550	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (529 aa)
	LOC106565635	Ephrin type-A receptor 8-like isoform X2. (1010 aa)
	LOC106613310	p2Y purinoceptor 12-like. (374 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2334 aa)
	itgb1bp1	Integrin beta-1-binding protein 1 isoform X1. (199 aa)
	LOC106585950	Chondroitin sulfate proteoglycan 4-like. (2117 aa)
	ENSSSAP00000062678	Si:dkey-280e21.3. (494 aa)
	LOC106589740	Stonin-1-like; Belongs to the Stoned B family. (779 aa)
	ptprc	Receptor-type tyrosine-protein phosphatase C isoform X1. (1412 aa)
	LOC106581495	p2Y purinoceptor 12-like. (430 aa)
	shtn1	Shootin-1. (441 aa)
	LOC106583107	Ephrin type-A receptor 8-like isoform X2. (1014 aa)
	LOC106578544	Neuropilin; Belongs to the neuropilin family. (928 aa)
	LOC100196679	ATP synthase subunit beta, mitochondrial. (517 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100196679	LOC106574550	ENSSSAP00000120544	ENSSSAP00000034279	ATP synthase subunit beta, mitochondrial.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.542
LOC106574550	LOC100196679	ENSSSAP00000034279	ENSSSAP00000120544	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta, mitochondrial.	0.542
LOC106581495	ptprc	ENSSSAP00000084886	ENSSSAP00000079402	p2Y purinoceptor 12-like.	Receptor-type tyrosine-protein phosphatase C isoform X1.	0.412
LOC106613310	ptprc	ENSSSAP00000037035	ENSSSAP00000079402	p2Y purinoceptor 12-like.	Receptor-type tyrosine-protein phosphatase C isoform X1.	0.412
ptprc	LOC106581495	ENSSSAP00000079402	ENSSSAP00000084886	Receptor-type tyrosine-protein phosphatase C isoform X1.	p2Y purinoceptor 12-like.	0.412
ptprc	LOC106613310	ENSSSAP00000079402	ENSSSAP00000037035	Receptor-type tyrosine-protein phosphatase C isoform X1.	p2Y purinoceptor 12-like.	0.412