35 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106610017	Protein FAM193A-like isoform X1. (1632 aa)
	lmnb1	lamin-B1; Belongs to the intermediate filament family. (588 aa)
	LOC106601863	SUN domain-containing protein 1-like isoform X1. (1253 aa)
	LOC106571259	SUN domain-containing protein 1-like isoform X2. (573 aa)
	LOC106600503	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (591 aa)
	ENSSSAP00000031421	Lymphoid-restricted membrane protein. (1109 aa)
	LOC106609941	Pericentriolar material 1 protein-like isoform X1. (2140 aa)
	LOC106569771	lamin-A-like; Belongs to the intermediate filament family. (634 aa)
	ENSSSAP00000040618	annotation not available (238 aa)
	LOC106569598	Protein kinase C iota type-like. (601 aa)
	lmnb2	lamin-B2; Belongs to the intermediate filament family. (589 aa)
	LOC106562715	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family. (585 aa)
	DCTN2	Dynactin subunit 2-like. (406 aa)
	ENSSSAP00000048576	annotation not available (119 aa)
	LOC106577911	Dynactin subunit 1-like isoform X3. (1286 aa)
	LOC106603506	Nesprin-1-like isoform X6. (8660 aa)
	ENSSSAP00000053037	annotation not available (848 aa)
	LOC106602553	Pericentriolar material 1 protein-like isoform X3. (2170 aa)
	DCTN2-2	Dynactin subunit 2. (512 aa)
	LOC106571714	Nesprin-2-like isoform X6. (813 aa)
	cep120	Centrosomal protein of 120 kDa isoform X1. (999 aa)
	LOC106602440	Calmin-like. (1302 aa)
	ENSSSAP00000081946	annotation not available (1090 aa)
	LOC106580757	Uncharacterized protein LOC106580757. (255 aa)
	LOC106611323	Nesprin-1-like isoform X3. (8131 aa)
	LOC106608960	Dynactin subunit 1-like isoform X2. (1278 aa)
	LOC106580679	lamin-A-like; Belongs to the intermediate filament family. (676 aa)
	LOC106613552	SUN domain-containing protein 2-like. (575 aa)
	LOC106589972	Transforming acidic coiled-coil-containing protein 2-like isoform X1. (1270 aa)
	LOC106599102	Nesprin-2-like isoform X3. (789 aa)
	LOC106611269	Calmin-like isoform X3. (1314 aa)
	LOC106611399	Dynactin subunit 1-like. (1052 aa)
	tmem201	Transmembrane protein 201 isoform X1. (743 aa)
	LOC106589358	SUN domain-containing protein 1-like isoform X4. (1032 aa)
	LMNA	lamin-A-like; Belongs to the intermediate filament family. (670 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCTN2	LOC106577911	ENSSSAP00000044790	ENSSSAP00000050578	Dynactin subunit 2-like.	Dynactin subunit 1-like isoform X3.	0.986
DCTN2	LOC106608960	ENSSSAP00000044790	ENSSSAP00000092750	Dynactin subunit 2-like.	Dynactin subunit 1-like isoform X2.	0.986
DCTN2	LOC106610017	ENSSSAP00000044790	ENSSSAP00000022808	Dynactin subunit 2-like.	Protein FAM193A-like isoform X1.	0.983
DCTN2	LOC106611399	ENSSSAP00000044790	ENSSSAP00000009107	Dynactin subunit 2-like.	Dynactin subunit 1-like.	0.986
DCTN2-2	LOC106577911	ENSSSAP00000072843	ENSSSAP00000050578	Dynactin subunit 2.	Dynactin subunit 1-like isoform X3.	0.986
DCTN2-2	LOC106608960	ENSSSAP00000072843	ENSSSAP00000092750	Dynactin subunit 2.	Dynactin subunit 1-like isoform X2.	0.986
DCTN2-2	LOC106610017	ENSSSAP00000072843	ENSSSAP00000022808	Dynactin subunit 2.	Protein FAM193A-like isoform X1.	0.983
DCTN2-2	LOC106611399	ENSSSAP00000072843	ENSSSAP00000009107	Dynactin subunit 2.	Dynactin subunit 1-like.	0.986
ENSSSAP00000031421	LOC106589358	ENSSSAP00000031421	ENSSSAP00000018564	Lymphoid-restricted membrane protein.	SUN domain-containing protein 1-like isoform X4.	0.429
ENSSSAP00000031421	LOC106601863	ENSSSAP00000031421	ENSSSAP00000028529	Lymphoid-restricted membrane protein.	SUN domain-containing protein 1-like isoform X1.	0.429
ENSSSAP00000040618	LMNA	ENSSSAP00000040618	ENSSSAP00000019524	annotation not available	lamin-A-like; Belongs to the intermediate filament family.	0.586
ENSSSAP00000040618	LOC106562715	ENSSSAP00000040618	ENSSSAP00000043570	annotation not available	lamin-L(III)-like isoform X2; Belongs to the intermediate filament family.	0.586
ENSSSAP00000040618	LOC106569771	ENSSSAP00000040618	ENSSSAP00000036482	annotation not available	lamin-A-like; Belongs to the intermediate filament family.	0.586
ENSSSAP00000040618	LOC106571714	ENSSSAP00000040618	ENSSSAP00000073672	annotation not available	Nesprin-2-like isoform X6.	0.732
ENSSSAP00000040618	LOC106580679	ENSSSAP00000040618	ENSSSAP00000093884	annotation not available	lamin-A-like; Belongs to the intermediate filament family.	0.586
ENSSSAP00000040618	LOC106580757	ENSSSAP00000040618	ENSSSAP00000087465	annotation not available	Uncharacterized protein LOC106580757.	0.732
ENSSSAP00000040618	LOC106599102	ENSSSAP00000040618	ENSSSAP00000005183	annotation not available	Nesprin-2-like isoform X3.	0.732
ENSSSAP00000040618	LOC106603506	ENSSSAP00000040618	ENSSSAP00000050986	annotation not available	Nesprin-1-like isoform X6.	0.732
ENSSSAP00000040618	LOC106611323	ENSSSAP00000040618	ENSSSAP00000091056	annotation not available	Nesprin-1-like isoform X3.	0.732
ENSSSAP00000040618	lmnb1	ENSSSAP00000040618	ENSSSAP00000028147	annotation not available	lamin-B1; Belongs to the intermediate filament family.	0.586