18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106610980	Putative ATP-dependent RNA helicase TDRD9 isoform X3. (1339 aa)
	ENSSSAP00000028630	annotation not available (213 aa)
	brdt	Bromodomain testis-specific protein isoform X1. (1170 aa)
	dmc1	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family. (337 aa)
	LOC106596226	Uncharacterized protein C17orf104 homolog. (110 aa)
	LOC106584160	Bromodomain testis-specific protein-like isoform X1. (1152 aa)
	LOC106607306	Uncharacterized protein C17orf104 homolog isoform X3. (832 aa)
	ENSSSAP00000017215	annotation not available (115 aa)
	meiob	Meiosis-specific with OB domain-containing protein isoform X1. (464 aa)
	LOC106601036	Uncharacterized protein C17orf104 homolog isoform X2. (837 aa)
	LOC106566748	Meiotic recombination protein SPO11-like isoform X2. (377 aa)
	ENSSSAP00000047854	annotation not available (265 aa)
	brca2	Breast cancer type 2 susceptibility protein isoform X5. (2826 aa)
	rad51c	DNA repair protein RAD51 homolog 3. (400 aa)
	LOC106582813	Forkhead box protein J3-like. (617 aa)
	FOXJ3	Forkhead box protein J3-like. (612 aa)
	rec8	Meiotic recombination protein REC8 homolog isoform X3. (598 aa)
	LOC106598466	Putative ATP-dependent RNA helicase TDRD9. (1342 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000017215	ENSSSAP00000028630	ENSSSAP00000017215	ENSSSAP00000028630	annotation not available	annotation not available	0.790
ENSSSAP00000017215	ENSSSAP00000047854	ENSSSAP00000017215	ENSSSAP00000047854	annotation not available	annotation not available	0.800
ENSSSAP00000017215	LOC106566748	ENSSSAP00000017215	ENSSSAP00000042212	annotation not available	Meiotic recombination protein SPO11-like isoform X2.	0.790
ENSSSAP00000017215	brca2	ENSSSAP00000017215	ENSSSAP00000049301	annotation not available	Breast cancer type 2 susceptibility protein isoform X5.	0.980
ENSSSAP00000017215	dmc1	ENSSSAP00000017215	ENSSSAP00000023876	annotation not available	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family.	0.599
ENSSSAP00000017215	meiob	ENSSSAP00000017215	ENSSSAP00000010976	annotation not available	Meiosis-specific with OB domain-containing protein isoform X1.	0.800
ENSSSAP00000028630	ENSSSAP00000017215	ENSSSAP00000028630	ENSSSAP00000017215	annotation not available	annotation not available	0.790
ENSSSAP00000028630	ENSSSAP00000047854	ENSSSAP00000028630	ENSSSAP00000047854	annotation not available	annotation not available	0.554
ENSSSAP00000028630	brca2	ENSSSAP00000028630	ENSSSAP00000049301	annotation not available	Breast cancer type 2 susceptibility protein isoform X5.	0.616
ENSSSAP00000028630	dmc1	ENSSSAP00000028630	ENSSSAP00000023876	annotation not available	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family.	0.914
ENSSSAP00000028630	meiob	ENSSSAP00000028630	ENSSSAP00000010976	annotation not available	Meiosis-specific with OB domain-containing protein isoform X1.	0.554
ENSSSAP00000028630	rad51c	ENSSSAP00000028630	ENSSSAP00000071867	annotation not available	DNA repair protein RAD51 homolog 3.	0.790
ENSSSAP00000028630	rec8	ENSSSAP00000028630	ENSSSAP00000120104	annotation not available	Meiotic recombination protein REC8 homolog isoform X3.	0.664
ENSSSAP00000047854	ENSSSAP00000017215	ENSSSAP00000047854	ENSSSAP00000017215	annotation not available	annotation not available	0.800
ENSSSAP00000047854	ENSSSAP00000028630	ENSSSAP00000047854	ENSSSAP00000028630	annotation not available	annotation not available	0.554
ENSSSAP00000047854	LOC106566748	ENSSSAP00000047854	ENSSSAP00000042212	annotation not available	Meiotic recombination protein SPO11-like isoform X2.	0.554
ENSSSAP00000047854	brca2	ENSSSAP00000047854	ENSSSAP00000049301	annotation not available	Breast cancer type 2 susceptibility protein isoform X5.	0.774
ENSSSAP00000047854	dmc1	ENSSSAP00000047854	ENSSSAP00000023876	annotation not available	Meiotic recombination protein DMC1/LIM15 homolog isoform X2; Belongs to the RecA family.	0.844
ENSSSAP00000047854	rad51c	ENSSSAP00000047854	ENSSSAP00000071867	annotation not available	DNA repair protein RAD51 homolog 3.	0.800
ENSSSAP00000047854	rec8	ENSSSAP00000047854	ENSSSAP00000120104	annotation not available	Meiotic recombination protein REC8 homolog isoform X3.	0.529