19 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106562262	Methenyltetrahydrofolate synthase domain-containing protein-like. (521 aa)
	LOC106589682	Mitochondrial cardiolipin hydrolase-like isoform X1. (234 aa)
	LOC106590216	Mitochondrial cardiolipin hydrolase-like. (226 aa)
	LOC106607789	Tudor domain-containing protein 15-like. (1876 aa)
	TDRD5	Tudor domain-containing protein 5-like. (981 aa)
	DCTN2	Dynactin subunit 2-like. (406 aa)
	LOC106577912	Tudor domain-containing protein 7B-like isoform X1. (1182 aa)
	ENSSSAP00000049834	annotation not available (93 aa)
	mthfsd	Methenyltetrahydrofolate synthase domain-containing protein isoform X1. (573 aa)
	tdrkh	Tudor and KH domain-containing protein isoform X2. (950 aa)
	LOC106569294	Uncharacterized protein LOC106569294. (698 aa)
	LOC106569292	Uncharacterized protein LOC106569292. (810 aa)
	DCTN2-2	Dynactin subunit 2. (512 aa)
	tdrd1	Tudor domain-containing protein 1 isoform X2. (1191 aa)
	LOC106608959	Tudor domain-containing protein 7B-like isoform X1. (1177 aa)
	LOC106602533	Tudor domain-containing protein 7B-like. (1257 aa)
	tdrd15	Tudor domain-containing protein 15 isoform X2. (1881 aa)
	tdrd6	Tudor domain-containing protein 6. (2304 aa)
	LOC106590309	Uncharacterized protein LOC106590309. (703 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106569292	tdrd15	ENSSSAP00000062561	ENSSSAP00000098161	Uncharacterized protein LOC106569292.	Tudor domain-containing protein 15 isoform X2.	0.409
LOC106569294	tdrd15	ENSSSAP00000062540	ENSSSAP00000098161	Uncharacterized protein LOC106569294.	Tudor domain-containing protein 15 isoform X2.	0.570
LOC106569294	tdrd6	ENSSSAP00000062540	ENSSSAP00000105881	Uncharacterized protein LOC106569294.	Tudor domain-containing protein 6.	0.468
LOC106577912	LOC106589682	ENSSSAP00000046567	ENSSSAP00000000551	Tudor domain-containing protein 7B-like isoform X1.	Mitochondrial cardiolipin hydrolase-like isoform X1.	0.506
LOC106577912	LOC106590216	ENSSSAP00000046567	ENSSSAP00000000926	Tudor domain-containing protein 7B-like isoform X1.	Mitochondrial cardiolipin hydrolase-like.	0.506
LOC106577912	TDRD5	ENSSSAP00000046567	ENSSSAP00000037420	Tudor domain-containing protein 7B-like isoform X1.	Tudor domain-containing protein 5-like.	0.439
LOC106577912	tdrkh	ENSSSAP00000046567	ENSSSAP00000060198	Tudor domain-containing protein 7B-like isoform X1.	Tudor and KH domain-containing protein isoform X2.	0.429
LOC106589682	LOC106577912	ENSSSAP00000000551	ENSSSAP00000046567	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor domain-containing protein 7B-like isoform X1.	0.506
LOC106589682	LOC106602533	ENSSSAP00000000551	ENSSSAP00000097867	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor domain-containing protein 7B-like.	0.506
LOC106589682	LOC106608959	ENSSSAP00000000551	ENSSSAP00000088285	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor domain-containing protein 7B-like isoform X1.	0.506
LOC106589682	TDRD5	ENSSSAP00000000551	ENSSSAP00000037420	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor domain-containing protein 5-like.	0.607
LOC106589682	tdrd1	ENSSSAP00000000551	ENSSSAP00000085561	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor domain-containing protein 1 isoform X2.	0.609
LOC106589682	tdrkh	ENSSSAP00000000551	ENSSSAP00000060198	Mitochondrial cardiolipin hydrolase-like isoform X1.	Tudor and KH domain-containing protein isoform X2.	0.610
LOC106590216	LOC106577912	ENSSSAP00000000926	ENSSSAP00000046567	Mitochondrial cardiolipin hydrolase-like.	Tudor domain-containing protein 7B-like isoform X1.	0.506
LOC106590216	LOC106602533	ENSSSAP00000000926	ENSSSAP00000097867	Mitochondrial cardiolipin hydrolase-like.	Tudor domain-containing protein 7B-like.	0.506
LOC106590216	LOC106608959	ENSSSAP00000000926	ENSSSAP00000088285	Mitochondrial cardiolipin hydrolase-like.	Tudor domain-containing protein 7B-like isoform X1.	0.506
LOC106590216	TDRD5	ENSSSAP00000000926	ENSSSAP00000037420	Mitochondrial cardiolipin hydrolase-like.	Tudor domain-containing protein 5-like.	0.607
LOC106590216	tdrd1	ENSSSAP00000000926	ENSSSAP00000085561	Mitochondrial cardiolipin hydrolase-like.	Tudor domain-containing protein 1 isoform X2.	0.609
LOC106590216	tdrkh	ENSSSAP00000000926	ENSSSAP00000060198	Mitochondrial cardiolipin hydrolase-like.	Tudor and KH domain-containing protein isoform X2.	0.610
LOC106590309	tdrd15	ENSSSAP00000107941	ENSSSAP00000098161	Uncharacterized protein LOC106590309.	Tudor domain-containing protein 15 isoform X2.	0.468