14 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106589772	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family. (98 aa)
	cxcl12	C-X-C motif chemokine ligand 12. (99 aa)
	LOC106604225	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family. (219 aa)
	LOC106580715	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (115 aa)
	LOC106570861	C-C motif chemokine. (124 aa)
	CCL19	C-C motif chemokine. (122 aa)
	ENSSSAP00000053417	annotation not available (92 aa)
	groa	Growth-regulated alpha protein precursor. (109 aa)
	LOC106600142	C-C motif chemokine 20-like. (113 aa)
	LOC106604935	C-X-C motif chemokine 14-like isoform X1. (101 aa)
	LOC100136511	C-C motif chemokine. (101 aa)
	cxl14	C-X-C motif chemokine 14 precursor. (100 aa)
	SDF1	Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family. (158 aa)
	LOC106561115	C-C motif chemokine. (101 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCL19	ENSSSAP00000053417	ENSSSAP00000092858	ENSSSAP00000053417	C-C motif chemokine.	annotation not available	0.757
CCL19	LOC106580715	ENSSSAP00000092858	ENSSSAP00000100768	C-C motif chemokine.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.744
CCL19	LOC106589772	ENSSSAP00000092858	ENSSSAP00000000735	C-C motif chemokine.	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.	0.815
CCL19	LOC106604225	ENSSSAP00000092858	ENSSSAP00000104300	C-C motif chemokine.	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.	0.835
CCL19	LOC106604935	ENSSSAP00000092858	ENSSSAP00000045496	C-C motif chemokine.	C-X-C motif chemokine 14-like isoform X1.	0.483
CCL19	SDF1	ENSSSAP00000092858	ENSSSAP00000011022	C-C motif chemokine.	Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family.	0.785
CCL19	cxcl12	ENSSSAP00000092858	ENSSSAP00000114756	C-C motif chemokine.	C-X-C motif chemokine ligand 12.	0.847
CCL19	cxl14	ENSSSAP00000092858	ENSSSAP00000041214	C-C motif chemokine.	C-X-C motif chemokine 14 precursor.	0.483
CCL19	groa	ENSSSAP00000092858	ENSSSAP00000053264	C-C motif chemokine.	Growth-regulated alpha protein precursor.	0.757
ENSSSAP00000053417	CCL19	ENSSSAP00000053417	ENSSSAP00000092858	annotation not available	C-C motif chemokine.	0.757
ENSSSAP00000053417	LOC100136511	ENSSSAP00000053417	ENSSSAP00000042503	annotation not available	C-C motif chemokine.	0.538
ENSSSAP00000053417	LOC106561115	ENSSSAP00000053417	ENSSSAP00000008019	annotation not available	C-C motif chemokine.	0.538
ENSSSAP00000053417	LOC106570861	ENSSSAP00000053417	ENSSSAP00000097109	annotation not available	C-C motif chemokine.	0.757
ENSSSAP00000053417	LOC106580715	ENSSSAP00000053417	ENSSSAP00000100768	annotation not available	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.960
ENSSSAP00000053417	LOC106589772	ENSSSAP00000053417	ENSSSAP00000000735	annotation not available	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.	0.965
ENSSSAP00000053417	LOC106600142	ENSSSAP00000053417	ENSSSAP00000051617	annotation not available	C-C motif chemokine 20-like.	0.682
ENSSSAP00000053417	LOC106604225	ENSSSAP00000053417	ENSSSAP00000104300	annotation not available	Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.	0.965
ENSSSAP00000053417	LOC106604935	ENSSSAP00000053417	ENSSSAP00000045496	annotation not available	C-X-C motif chemokine 14-like isoform X1.	0.928
ENSSSAP00000053417	SDF1	ENSSSAP00000053417	ENSSSAP00000011022	annotation not available	Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family.	0.965
ENSSSAP00000053417	cxcl12	ENSSSAP00000053417	ENSSSAP00000114756	annotation not available	C-X-C motif chemokine ligand 12.	0.965