15 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xpa	DNA-repair protein complementing XP-A cells homolog. (274 aa)
	ENSSSAP00000005631	annotation not available (94 aa)
	LOC106594252	Microfibril-associated glycoprotein 4-like. (260 aa)
	ENSSSAP00000011598	annotation not available (236 aa)
	LOC106596262	Microfibril-associated glycoprotein 4-like isoform X1. (177 aa)
	ercc4	DNA repair endonuclease XPF. (911 aa)
	mfap4	Microfibrillar-associated protein 4 precursor. (240 aa)
	LOC106591053	Microfibril-associated glycoprotein 4-like isoform X1. (236 aa)
	LOC106591086	Microfibril-associated glycoprotein 4-like isoform X1. (243 aa)
	LOC106578760	Microfibril-associated glycoprotein 4-like. (241 aa)
	ercc2	TFIIH basal transcription factor complex helicase subunit. (849 aa)
	ENSSSAP00000074515	Excision repair cross-complementation group 2. (324 aa)
	ENSSSAP00000079966	annotation not available (1325 aa)
	xpa-2	DNA repair protein complementing XP-A cells. (278 aa)
	ercc1	DNA excision repair protein ERCC-1. (383 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000005631	ENSSSAP00000074515	ENSSSAP00000005631	ENSSSAP00000074515	annotation not available	Excision repair cross-complementation group 2.	0.971
ENSSSAP00000005631	ENSSSAP00000079966	ENSSSAP00000005631	ENSSSAP00000079966	annotation not available	annotation not available	0.980
ENSSSAP00000005631	ercc1	ENSSSAP00000005631	ENSSSAP00000102627	annotation not available	DNA excision repair protein ERCC-1.	0.983
ENSSSAP00000005631	ercc2	ENSSSAP00000005631	ENSSSAP00000063489	annotation not available	TFIIH basal transcription factor complex helicase subunit.	0.971
ENSSSAP00000005631	ercc4	ENSSSAP00000005631	ENSSSAP00000037552	annotation not available	DNA repair endonuclease XPF.	0.988
ENSSSAP00000074515	ENSSSAP00000005631	ENSSSAP00000074515	ENSSSAP00000005631	Excision repair cross-complementation group 2.	annotation not available	0.971
ENSSSAP00000074515	ENSSSAP00000079966	ENSSSAP00000074515	ENSSSAP00000079966	Excision repair cross-complementation group 2.	annotation not available	0.859
ENSSSAP00000074515	ercc1	ENSSSAP00000074515	ENSSSAP00000102627	Excision repair cross-complementation group 2.	DNA excision repair protein ERCC-1.	0.861
ENSSSAP00000074515	ercc4	ENSSSAP00000074515	ENSSSAP00000037552	Excision repair cross-complementation group 2.	DNA repair endonuclease XPF.	0.900
ENSSSAP00000074515	xpa	ENSSSAP00000074515	ENSSSAP00000071401	Excision repair cross-complementation group 2.	DNA-repair protein complementing XP-A cells homolog.	0.971
ENSSSAP00000074515	xpa-2	ENSSSAP00000074515	ENSSSAP00000100958	Excision repair cross-complementation group 2.	DNA repair protein complementing XP-A cells.	0.971
ENSSSAP00000079966	ENSSSAP00000005631	ENSSSAP00000079966	ENSSSAP00000005631	annotation not available	annotation not available	0.980
ENSSSAP00000079966	ENSSSAP00000074515	ENSSSAP00000079966	ENSSSAP00000074515	annotation not available	Excision repair cross-complementation group 2.	0.859
ENSSSAP00000079966	ercc2	ENSSSAP00000079966	ENSSSAP00000063489	annotation not available	TFIIH basal transcription factor complex helicase subunit.	0.859
ENSSSAP00000079966	ercc4	ENSSSAP00000079966	ENSSSAP00000037552	annotation not available	DNA repair endonuclease XPF.	0.997
ENSSSAP00000079966	xpa	ENSSSAP00000079966	ENSSSAP00000071401	annotation not available	DNA-repair protein complementing XP-A cells homolog.	0.980
ENSSSAP00000079966	xpa-2	ENSSSAP00000079966	ENSSSAP00000100958	annotation not available	DNA repair protein complementing XP-A cells.	0.980
ercc1	ENSSSAP00000005631	ENSSSAP00000102627	ENSSSAP00000005631	DNA excision repair protein ERCC-1.	annotation not available	0.983
ercc1	ENSSSAP00000074515	ENSSSAP00000102627	ENSSSAP00000074515	DNA excision repair protein ERCC-1.	Excision repair cross-complementation group 2.	0.861
ercc1	ercc2	ENSSSAP00000102627	ENSSSAP00000063489	DNA excision repair protein ERCC-1.	TFIIH basal transcription factor complex helicase subunit.	0.863