26 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106593785	Guanine nucleotide-binding protein subunit alpha-12-like. (248 aa)
	LOC106562564	Amino acid transporter. (518 aa)
	LOC106573351	Amino acid transporter. (575 aa)
	LOC106610223	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family. (481 aa)
	ercc1	DNA excision repair protein ERCC-1. (383 aa)
	LOC106580569	RING finger protein 165-like isoform X2. (353 aa)
	ENSSSAP00000079966	annotation not available (1325 aa)
	LOC106601550	Amino acid transporter. (739 aa)
	LOC106593828	Translocation protein SEC63 homolog isoform X2. (204 aa)
	GNA13	Guanine nucleotide-binding protein subunit alpha-13-like. (158 aa)
	LOC106593532	Guanine nucleotide-binding protein subunit alpha-12-like. (157 aa)
	rnf165	RING finger protein 165 isoform X1. (346 aa)
	ENSSSAP00000006873	annotation not available (184 aa)
	slc1a2	Amino acid transporter. (570 aa)
	LOC106585175	RING finger protein 165-like isoform X1. (353 aa)
	LOC106589028	Uncharacterized protein LOC106589028. (275 aa)
	GNA13-2	Guanine nucleotide-binding protein alpha-13 subunit. (377 aa)
	LOC106562926	RING finger protein 165-like isoform X2. (354 aa)
	ENSSSAP00000068157	annotation not available (98 aa)
	ENSSSAP00000067290	annotation not available (362 aa)
	LOC106594878	Guanine nucleotide-binding protein subunit alpha-13-like. (158 aa)
	LOC106578207	Endothelin-1 receptor-like. (222 aa)
	wrn	Werner syndrome ATP-dependent helicase isoform X2. (1467 aa)
	LOC106587903	Amino acid transporter. (548 aa)
	LOC106570392	Endothelin-1-like. (203 aa)
	LOC106589443	Guanine nucleotide-binding protein subunit alpha-13-like. (377 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000079966	wrn	ENSSSAP00000079966	ENSSSAP00000037318	annotation not available	Werner syndrome ATP-dependent helicase isoform X2.	0.819
GNA13	LOC106589443	ENSSSAP00000005490	ENSSSAP00000018489	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.900
GNA13	LOC106593532	ENSSSAP00000005490	ENSSSAP00000005688	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-12-like.	0.901
GNA13	LOC106610223	ENSSSAP00000005490	ENSSSAP00000104145	Guanine nucleotide-binding protein subunit alpha-13-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.932
LOC106570392	LOC106578207	ENSSSAP00000019078	ENSSSAP00000041268	Endothelin-1-like.	Endothelin-1 receptor-like.	0.985
LOC106570392	LOC106589028	ENSSSAP00000019078	ENSSSAP00000076828	Endothelin-1-like.	Uncharacterized protein LOC106589028.	0.900
LOC106570392	LOC106610223	ENSSSAP00000019078	ENSSSAP00000104145	Endothelin-1-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.998
LOC106578207	LOC106570392	ENSSSAP00000041268	ENSSSAP00000019078	Endothelin-1 receptor-like.	Endothelin-1-like.	0.985
LOC106578207	LOC106589028	ENSSSAP00000041268	ENSSSAP00000076828	Endothelin-1 receptor-like.	Uncharacterized protein LOC106589028.	0.985
LOC106589028	LOC106570392	ENSSSAP00000076828	ENSSSAP00000019078	Uncharacterized protein LOC106589028.	Endothelin-1-like.	0.900
LOC106589028	LOC106578207	ENSSSAP00000076828	ENSSSAP00000041268	Uncharacterized protein LOC106589028.	Endothelin-1 receptor-like.	0.985
LOC106589028	LOC106610223	ENSSSAP00000076828	ENSSSAP00000104145	Uncharacterized protein LOC106589028.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.998
LOC106589443	GNA13	ENSSSAP00000018489	ENSSSAP00000005490	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.900
LOC106589443	LOC106593532	ENSSSAP00000018489	ENSSSAP00000005688	Guanine nucleotide-binding protein subunit alpha-13-like.	Guanine nucleotide-binding protein subunit alpha-12-like.	0.901
LOC106589443	LOC106610223	ENSSSAP00000018489	ENSSSAP00000104145	Guanine nucleotide-binding protein subunit alpha-13-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.932
LOC106593532	GNA13	ENSSSAP00000005688	ENSSSAP00000005490	Guanine nucleotide-binding protein subunit alpha-12-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.901
LOC106593532	LOC106589443	ENSSSAP00000005688	ENSSSAP00000018489	Guanine nucleotide-binding protein subunit alpha-12-like.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.901
LOC106593532	LOC106610223	ENSSSAP00000005688	ENSSSAP00000104145	Guanine nucleotide-binding protein subunit alpha-12-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.932
LOC106593828	wrn	ENSSSAP00000004428	ENSSSAP00000037318	Translocation protein SEC63 homolog isoform X2.	Werner syndrome ATP-dependent helicase isoform X2.	0.489
LOC106610223	GNA13	ENSSSAP00000104145	ENSSSAP00000005490	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide-binding protein subunit alpha-13-like.	0.932