25 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106584061	Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
	BCDIN3D	pre-miRNA 5'-monophosphate methyltransferase. (280 aa)
	LOC106607118	Probable ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (566 aa)
	LOC106605117	Ribonuclease ZC3H12A-like. (662 aa)
	ENSSSAP00000014056	annotation not available (335 aa)
	dis3l2	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1049 aa)
	LOC106606066	E3 ubiquitin-protein ligase TRIM71-like. (818 aa)
	LOC106601225	Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family. (631 aa)
	LOC106601397	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family. (634 aa)
	LOC106585979	LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
	LOC106571153	Protein lin-28 homolog B-like isoform X3. (231 aa)
	LIN28B-2	Protein lin-28 homolog A-like isoform X1. (300 aa)
	drosha	Ribonuclease 3 isoform X1. (1437 aa)
	LIN28B	Protein lin-28 homolog A-like isoform X1. (285 aa)
	LOC106588780	E3 ubiquitin-protein ligase TRIM71-like. (815 aa)
	LOC106583205	Ribonuclease ZC3H12A-like. (671 aa)
	LOC106560426	Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
	DDX5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (659 aa)
	LOC100380868	Terminal uridylyltransferase 7. (897 aa)
	LOC106570646	E3 ubiquitin-protein ligase TRIM71-like. (824 aa)
	LOC106590917	Terminal uridylyltransferase 7-like. (217 aa)
	LOC106607557	Protein lin-28 homolog A-like isoform X1. (271 aa)
	ENSSSAP00000017280	annotation not available (634 aa)
	zc3h12a	Ribonuclease ZC3H12A. (615 aa)
	LOC106589020	Ribonuclease ZC3H12A-like. (700 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	LOC106601397	ENSSSAP00000044729	ENSSSAP00000001672	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	0.901
DDX5	drosha	ENSSSAP00000044729	ENSSSAP00000054435	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.806
ENSSSAP00000014056	drosha	ENSSSAP00000014056	ENSSSAP00000054435	annotation not available	Ribonuclease 3 isoform X1.	0.759
ENSSSAP00000017280	drosha	ENSSSAP00000017280	ENSSSAP00000054435	annotation not available	Ribonuclease 3 isoform X1.	0.759
LIN28B	drosha	ENSSSAP00000051643	ENSSSAP00000054435	Protein lin-28 homolog A-like isoform X1.	Ribonuclease 3 isoform X1.	0.507
LIN28B-2	drosha	ENSSSAP00000062267	ENSSSAP00000054435	Protein lin-28 homolog A-like isoform X1.	Ribonuclease 3 isoform X1.	0.507
LOC100380868	dis3l2	ENSSSAP00000041303	ENSSSAP00000010245	Terminal uridylyltransferase 7.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.663
LOC106560426	dis3l2	ENSSSAP00000045180	ENSSSAP00000010245	Terminal uridylyltransferase 4-like isoform X2.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.595
LOC106571153	drosha	ENSSSAP00000070843	ENSSSAP00000054435	Protein lin-28 homolog B-like isoform X3.	Ribonuclease 3 isoform X1.	0.507
LOC106584061	dis3l2	ENSSSAP00000020551	ENSSSAP00000010245	Terminal uridylyltransferase 4-like isoform X2.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.595
LOC106585979	dis3l2	ENSSSAP00000070504	ENSSSAP00000010245	LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.663
LOC106590917	dis3l2	ENSSSAP00000033498	ENSSSAP00000010245	Terminal uridylyltransferase 7-like.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	0.663
LOC106601225	drosha	ENSSSAP00000002569	ENSSSAP00000054435	Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.759
LOC106601397	DDX5	ENSSSAP00000001672	ENSSSAP00000044729	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	0.901
LOC106601397	drosha	ENSSSAP00000001672	ENSSSAP00000054435	Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.806
LOC106607118	drosha	ENSSSAP00000084978	ENSSSAP00000054435	Probable ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family.	Ribonuclease 3 isoform X1.	0.759
LOC106607557	drosha	ENSSSAP00000016188	ENSSSAP00000054435	Protein lin-28 homolog A-like isoform X1.	Ribonuclease 3 isoform X1.	0.507
dis3l2	LOC100380868	ENSSSAP00000010245	ENSSSAP00000041303	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	Terminal uridylyltransferase 7.	0.663
dis3l2	LOC106560426	ENSSSAP00000010245	ENSSSAP00000045180	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	Terminal uridylyltransferase 4-like isoform X2.	0.595
dis3l2	LOC106584061	ENSSSAP00000010245	ENSSSAP00000020551	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.	Terminal uridylyltransferase 4-like isoform X2.	0.595