21 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vegfc	Vascular endothelial growth factor C precursor; Belongs to the PDGF/VEGF growth factor family. (409 aa)
	ENSSSAP00000007214	Origin recognition complex, subunit 3. (574 aa)
	epm2a	Laforin. (316 aa)
	LOC106563816	Merlin-like isoform X2. (598 aa)
	nf2	Merlin. (604 aa)
	orc3	Origin recognition complex subunit 3. (720 aa)
	LOC106572920	methyl-CpG-binding protein 2-like isoform X1. (668 aa)
	il34	Interleukin-34. (227 aa)
	LOC106566345	methyl-CpG-binding protein 2-like. (680 aa)
	LOC106613084	Neurofibromin-like isoform X5. (2779 aa)
	LOC106603288	Neurofibromin-like isoform X2. (2801 aa)
	lepr	Leptin receptor isoform X1. (1146 aa)
	LOC106610161	Vascular endothelial growth factor C-like isoform X1; Belongs to the PDGF/VEGF growth factor family. (407 aa)
	LOC106573710	Interleukin-34-like. (211 aa)
	LOC106567758	Neurofibromin isoform X6. (2773 aa)
	LOC106571887	Uncharacterized protein LOC106571887. (289 aa)
	LOC106566647	Uncharacterized protein LOC106566647. (276 aa)
	rb1	Retinoblastoma-associated protein. (910 aa)
	csf1	Macrophage colony-stimulating factor 1. (591 aa)
	lepr2	Leptin receptor-like isoform X1. (1147 aa)
	LOC106565101	Uncharacterized protein LOC106565101. (565 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563816	LOC106567758	ENSSSAP00000013989	ENSSSAP00000103317	Merlin-like isoform X2.	Neurofibromin isoform X6.	0.511
LOC106563816	LOC106603288	ENSSSAP00000013989	ENSSSAP00000063392	Merlin-like isoform X2.	Neurofibromin-like isoform X2.	0.511
LOC106563816	LOC106613084	ENSSSAP00000013989	ENSSSAP00000062149	Merlin-like isoform X2.	Neurofibromin-like isoform X5.	0.511
LOC106563816	nf2	ENSSSAP00000013989	ENSSSAP00000020006	Merlin-like isoform X2.	Merlin.	0.901
LOC106565101	LOC106573710	ENSSSAP00000120009	ENSSSAP00000086179	Uncharacterized protein LOC106565101.	Interleukin-34-like.	0.812
LOC106565101	csf1	ENSSSAP00000120009	ENSSSAP00000119084	Uncharacterized protein LOC106565101.	Macrophage colony-stimulating factor 1.	0.901
LOC106565101	il34	ENSSSAP00000120009	ENSSSAP00000053012	Uncharacterized protein LOC106565101.	Interleukin-34.	0.812
LOC106566647	LOC106573710	ENSSSAP00000110648	ENSSSAP00000086179	Uncharacterized protein LOC106566647.	Interleukin-34-like.	0.812
LOC106566647	il34	ENSSSAP00000110648	ENSSSAP00000053012	Uncharacterized protein LOC106566647.	Interleukin-34.	0.812
LOC106567758	LOC106563816	ENSSSAP00000103317	ENSSSAP00000013989	Neurofibromin isoform X6.	Merlin-like isoform X2.	0.511
LOC106567758	nf2	ENSSSAP00000103317	ENSSSAP00000020006	Neurofibromin isoform X6.	Merlin.	0.511
LOC106571887	LOC106573710	ENSSSAP00000108598	ENSSSAP00000086179	Uncharacterized protein LOC106571887.	Interleukin-34-like.	0.812
LOC106571887	il34	ENSSSAP00000108598	ENSSSAP00000053012	Uncharacterized protein LOC106571887.	Interleukin-34.	0.812
LOC106573710	LOC106565101	ENSSSAP00000086179	ENSSSAP00000120009	Interleukin-34-like.	Uncharacterized protein LOC106565101.	0.812
LOC106573710	LOC106566647	ENSSSAP00000086179	ENSSSAP00000110648	Interleukin-34-like.	Uncharacterized protein LOC106566647.	0.812
LOC106573710	LOC106571887	ENSSSAP00000086179	ENSSSAP00000108598	Interleukin-34-like.	Uncharacterized protein LOC106571887.	0.812
LOC106573710	csf1	ENSSSAP00000086179	ENSSSAP00000119084	Interleukin-34-like.	Macrophage colony-stimulating factor 1.	0.867
LOC106573710	il34	ENSSSAP00000086179	ENSSSAP00000053012	Interleukin-34-like.	Interleukin-34.	0.901
LOC106603288	LOC106563816	ENSSSAP00000063392	ENSSSAP00000013989	Neurofibromin-like isoform X2.	Merlin-like isoform X2.	0.511
LOC106603288	LOC106613084	ENSSSAP00000063392	ENSSSAP00000062149	Neurofibromin-like isoform X2.	Neurofibromin-like isoform X5.	0.900