(33 nodes) Hexosaminidase activity network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106568911	Beta-hexosaminidase. (550 aa)
	ENSSSAP00000001211	Zgc:113333. (462 aa)
	LOC106607615	Protein FAM149B1-like isoform X5. (761 aa)
	oga	Protein O-GlcNAcase. (935 aa)
	LOC106609082	Protein O-GlcNAcase-like isoform X1. (697 aa)
	CEMIP	Cell migration-inducing and hyaluronan-binding protein. (1013 aa)
	LOC106566776	Hyaluronidase. (437 aa)
	ENSSSAP00000029440	annotation not available (142 aa)
	LOC106565981	Hyaluronidase. (474 aa)
	LOC106565982	Hyaluronidase. (444 aa)
	HYAL2	Hyaluronidase. (478 aa)
	LOC106606695	Hexosaminidase D-like. (569 aa)
	HEXA	Beta-hexosaminidase. (589 aa)
	fam149b1	Protein FAM149B1 isoform X2. (691 aa)
	LOC106605373	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X1. (593 aa)
	GM2A	Ganglioside GM2 activator isoform X1. (216 aa)
	ENSSSAP00000065691	annotation not available (241 aa)
	LOC106585357-2	Transmembrane protein 2-like. (1409 aa)
	hexd	Hexosaminidase D. (512 aa)
	sap3	Ganglioside GM2 activator precursor. (228 aa)
	LOC106583436	Hyaluronidase. (478 aa)
	hexb	Beta-hexosaminidase. (547 aa)
	fam149a	Protein FAM149A isoform X1. (685 aa)
	LOC106584561	Hyaluronidase. (505 aa)
	SPAM1	Hyaluronidase. (478 aa)
	HYAL2-2	Hyaluronidase. (472 aa)
	LOC106580058	Transmembrane protein 2-like. (1408 aa)
	LOC106576126	Hyaluronidase. (1095 aa)
	LOC106585357	Transmembrane protein 2-like. (1409 aa)
	SPAM1-2	Hyaluronidase. (464 aa)
	LOC106561029	Hyaluronidase. (512 aa)
	LOC106561028	Hyaluronidase. (492 aa)
	LOC106576856	Protein O-GlcNAcase-like isoform X2. (923 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEMIP	HYAL2	ENSSSAP00000018328	ENSSSAP00000033747	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	HYAL2-2	ENSSSAP00000018328	ENSSSAP00000095248	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106561029	ENSSSAP00000018328	ENSSSAP00000110362	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
CEMIP	LOC106565981	ENSSSAP00000018328	ENSSSAP00000030943	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106565982	ENSSSAP00000018328	ENSSSAP00000030960	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.671
CEMIP	LOC106583436	ENSSSAP00000018328	ENSSSAP00000077066	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106584561	ENSSSAP00000018328	ENSSSAP00000094469	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
ENSSSAP00000001211	LOC106568911	ENSSSAP00000001211	ENSSSAP00000000744	Zgc:113333.	Beta-hexosaminidase.	0.475
ENSSSAP00000001211	hexb	ENSSSAP00000001211	ENSSSAP00000087340	Zgc:113333.	Beta-hexosaminidase.	0.475
ENSSSAP00000029440	LOC106568911	ENSSSAP00000029440	ENSSSAP00000000744	annotation not available	Beta-hexosaminidase.	0.779
ENSSSAP00000029440	LOC106607615	ENSSSAP00000029440	ENSSSAP00000001528	annotation not available	Protein FAM149B1-like isoform X5.	0.640
ENSSSAP00000029440	fam149a	ENSSSAP00000029440	ENSSSAP00000094210	annotation not available	Protein FAM149A isoform X1.	0.640
ENSSSAP00000029440	fam149b1	ENSSSAP00000029440	ENSSSAP00000052553	annotation not available	Protein FAM149B1 isoform X2.	0.640
ENSSSAP00000029440	hexb	ENSSSAP00000029440	ENSSSAP00000087340	annotation not available	Beta-hexosaminidase.	0.779
GM2A	LOC106568911	ENSSSAP00000064374	ENSSSAP00000000744	Ganglioside GM2 activator isoform X1.	Beta-hexosaminidase.	0.779
GM2A	LOC106607615	ENSSSAP00000064374	ENSSSAP00000001528	Ganglioside GM2 activator isoform X1.	Protein FAM149B1-like isoform X5.	0.640
GM2A	fam149a	ENSSSAP00000064374	ENSSSAP00000094210	Ganglioside GM2 activator isoform X1.	Protein FAM149A isoform X1.	0.640
GM2A	fam149b1	ENSSSAP00000064374	ENSSSAP00000052553	Ganglioside GM2 activator isoform X1.	Protein FAM149B1 isoform X2.	0.640
GM2A	hexb	ENSSSAP00000064374	ENSSSAP00000087340	Ganglioside GM2 activator isoform X1.	Beta-hexosaminidase.	0.779
GM2A	sap3	ENSSSAP00000064374	ENSSSAP00000076674	Ganglioside GM2 activator isoform X1.	Ganglioside GM2 activator precursor.	0.901