5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHO	Rhodopsin. (354 aa)
	LOC106560712	Retinoschisin-like. (153 aa)
	LOC106597264	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family. (478 aa)
	ENSSSAP00000110237	Rhodopsin, like. (316 aa)
	LOC100136370	Rhodopsin. (354 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000110237	LOC106597264	ENSSSAP00000110237	ENSSSAP00000058632	Rhodopsin, like.	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	0.481
LOC100136370	LOC106597264	ENSSSAP00000111426	ENSSSAP00000058632	Rhodopsin.	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	0.481
LOC100136370	RHO	ENSSSAP00000111426	ENSSSAP00000013279	Rhodopsin.	Rhodopsin.	0.916
LOC106597264	ENSSSAP00000110237	ENSSSAP00000058632	ENSSSAP00000110237	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	Rhodopsin, like.	0.481
LOC106597264	LOC100136370	ENSSSAP00000058632	ENSSSAP00000111426	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	Rhodopsin.	0.481
LOC106597264	RHO	ENSSSAP00000058632	ENSSSAP00000013279	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	Rhodopsin.	0.481
RHO	LOC100136370	ENSSSAP00000013279	ENSSSAP00000111426	Rhodopsin.	Rhodopsin.	0.916
RHO	LOC106597264	ENSSSAP00000013279	ENSSSAP00000058632	Rhodopsin.	LOW QUALITY PROTEIN: melanopsin-like; Belongs to the G-protein coupled receptor 1 family.	0.481