44 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106595167-2	Integrator complex subunit 1-like. (1175 aa)
	LOC106599369	Target of EGR1 protein 1-like. (510 aa)
	ENSSSAP00000113759	annotation not available (206 aa)
	ENSSSAP00000112425	annotation not available (94 aa)
	ENSSSAP00000112343	annotation not available (130 aa)
	ints8	Integrator complex subunit 8 isoform X1. (1008 aa)
	exosc7	Exosome complex exonuclease RRP42. (316 aa)
	ENSSSAP00000105998	annotation not available (160 aa)
	LOC106582497	Integrator complex subunit 6-like. (889 aa)
	ints11	Integrator complex subunit 11. (652 aa)
	ENSSSAP00000096262	annotation not available (66 aa)
	ENSSSAP00000096253	Integrator complex subunit 11. (393 aa)
	usb1	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (320 aa)
	ENSSSAP00000096020	annotation not available (183 aa)
	ints10	Integrator complex subunit 10. (741 aa)
	ints4	Integrator complex subunit 4. (980 aa)
	tut1	Speckle targeted PIP5K1A-regulated poly(A) polymerase. (800 aa)
	LOC106604380	Integrator complex subunit 5-like. (1002 aa)
	ENSSSAP00000067326	annotation not available (94 aa)
	LOC106607338	LOW QUALITY PROTEIN: integrator complex subunit 1-like. (2202 aa)
	ints7	Integrator complex subunit 7. (970 aa)
	exosc5	Exosome complex component RRP46 isoform X1. (228 aa)
	exosc9	Exosome complex component RRP45. (524 aa)
	toe1	Target of EGR1 protein 1. (528 aa)
	exos2	Exosome complex exonuclease RRP4. (296 aa)
	LOC106610331	Integrator complex subunit 12-like isoform X1. (488 aa)
	exosc6	Exosome complex exonuclease MTR3. (277 aa)
	ENSSSAP00000044045	annotation not available (168 aa)
	LOC106566956	Exosome complex component RRP4-like. (247 aa)
	exosc3	Exosome complex component RRP40. (244 aa)
	ints9	Integrator complex subunit 9 isoform X2. (708 aa)
	LOC106601055	Integrator complex subunit 1-like. (1711 aa)
	ENSSSAP00000034844	annotation not available (94 aa)
	ints6l	Protein DDX26B. (906 aa)
	ENSSSAP00000023927	annotation not available (89 aa)
	LOC106595167-3	Integrator complex subunit 1-like. (1175 aa)
	ENSSSAP00000022746	annotation not available (94 aa)
	ENSSSAP00000022583	annotation not available (94 aa)
	LOC106595167	Integrator complex subunit 1-like. (1175 aa)
	EXOS9	Exosome complex component RRP45-like. (94 aa)
	LOC106584862	Von Willebrand factor A domain-containing protein 9-like. (157 aa)
	exosc8	Exosome complex component RRP43. (704 aa)
	INTS12	Integrator complex subunit 12-like isoform X1. (480 aa)
	exos4	Exosome complex exonuclease RRP41. (245 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000022583	LOC106566956	ENSSSAP00000022583	ENSSSAP00000040518	annotation not available	Exosome complex component RRP4-like.	0.968
ENSSSAP00000022583	LOC106599369	ENSSSAP00000022583	ENSSSAP00000117937	annotation not available	Target of EGR1 protein 1-like.	0.495
ENSSSAP00000022583	exos2	ENSSSAP00000022583	ENSSSAP00000055169	annotation not available	Exosome complex exonuclease RRP4.	0.968
ENSSSAP00000022583	exos4	ENSSSAP00000022583	ENSSSAP00000004119	annotation not available	Exosome complex exonuclease RRP41.	0.984
ENSSSAP00000022583	exosc3	ENSSSAP00000022583	ENSSSAP00000040418	annotation not available	Exosome complex component RRP40.	0.984
ENSSSAP00000022583	exosc5	ENSSSAP00000022583	ENSSSAP00000064052	annotation not available	Exosome complex component RRP46 isoform X1.	0.983
ENSSSAP00000022583	exosc6	ENSSSAP00000022583	ENSSSAP00000053772	annotation not available	Exosome complex exonuclease MTR3.	0.984
ENSSSAP00000022583	exosc7	ENSSSAP00000022583	ENSSSAP00000110644	annotation not available	Exosome complex exonuclease RRP42.	0.988
ENSSSAP00000022583	exosc8	ENSSSAP00000022583	ENSSSAP00000016456	annotation not available	Exosome complex component RRP43.	0.986
ENSSSAP00000022583	toe1	ENSSSAP00000022583	ENSSSAP00000058043	annotation not available	Target of EGR1 protein 1.	0.495
ENSSSAP00000022746	LOC106566956	ENSSSAP00000022746	ENSSSAP00000040518	annotation not available	Exosome complex component RRP4-like.	0.968
ENSSSAP00000022746	LOC106599369	ENSSSAP00000022746	ENSSSAP00000117937	annotation not available	Target of EGR1 protein 1-like.	0.495
ENSSSAP00000022746	exos2	ENSSSAP00000022746	ENSSSAP00000055169	annotation not available	Exosome complex exonuclease RRP4.	0.968
ENSSSAP00000022746	exos4	ENSSSAP00000022746	ENSSSAP00000004119	annotation not available	Exosome complex exonuclease RRP41.	0.984
ENSSSAP00000022746	exosc3	ENSSSAP00000022746	ENSSSAP00000040418	annotation not available	Exosome complex component RRP40.	0.984
ENSSSAP00000022746	exosc5	ENSSSAP00000022746	ENSSSAP00000064052	annotation not available	Exosome complex component RRP46 isoform X1.	0.983
ENSSSAP00000022746	exosc6	ENSSSAP00000022746	ENSSSAP00000053772	annotation not available	Exosome complex exonuclease MTR3.	0.984
ENSSSAP00000022746	exosc7	ENSSSAP00000022746	ENSSSAP00000110644	annotation not available	Exosome complex exonuclease RRP42.	0.988
ENSSSAP00000022746	exosc8	ENSSSAP00000022746	ENSSSAP00000016456	annotation not available	Exosome complex component RRP43.	0.986
ENSSSAP00000022746	toe1	ENSSSAP00000022746	ENSSSAP00000058043	annotation not available	Target of EGR1 protein 1.	0.495