16 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPAM1-2	Hyaluronidase. (464 aa)
	LOC100136559	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	CEMIP	Cell migration-inducing and hyaluronan-binding protein. (1013 aa)
	LOC106566776	Hyaluronidase. (437 aa)
	LOC106565981	Hyaluronidase. (474 aa)
	HYAL2	Hyaluronidase. (478 aa)
	LOC106613337	Transforming growth factor beta; Belongs to the TGF-beta family. (384 aa)
	LOC106585357-2	Transmembrane protein 2-like. (1409 aa)
	LOC106583436	Hyaluronidase. (478 aa)
	LOC106584561	Hyaluronidase. (505 aa)
	HYAL2-2	Hyaluronidase. (472 aa)
	LOC106580058	Transmembrane protein 2-like. (1408 aa)
	LOC106576126	Hyaluronidase. (1095 aa)
	LOC106585357	Transmembrane protein 2-like. (1409 aa)
	LOC106563563	Transforming growth factor beta; Belongs to the TGF-beta family. (390 aa)
	LOC106561029	Hyaluronidase. (512 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEMIP	HYAL2	ENSSSAP00000018328	ENSSSAP00000033747	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	HYAL2-2	ENSSSAP00000018328	ENSSSAP00000095248	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106561029	ENSSSAP00000018328	ENSSSAP00000110362	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
CEMIP	LOC106565981	ENSSSAP00000018328	ENSSSAP00000030943	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106583436	ENSSSAP00000018328	ENSSSAP00000077066	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.500
CEMIP	LOC106584561	ENSSSAP00000018328	ENSSSAP00000094469	Cell migration-inducing and hyaluronan-binding protein.	Hyaluronidase.	0.572
HYAL2	CEMIP	ENSSSAP00000033747	ENSSSAP00000018328	Hyaluronidase.	Cell migration-inducing and hyaluronan-binding protein.	0.500
HYAL2	LOC106580058	ENSSSAP00000033747	ENSSSAP00000099101	Hyaluronidase.	Transmembrane protein 2-like.	0.413
HYAL2	LOC106585357	ENSSSAP00000033747	ENSSSAP00000103216	Hyaluronidase.	Transmembrane protein 2-like.	0.413
HYAL2	LOC106585357-2	ENSSSAP00000033747	ENSSSAP00000066516	Hyaluronidase.	Transmembrane protein 2-like.	0.413
HYAL2-2	CEMIP	ENSSSAP00000095248	ENSSSAP00000018328	Hyaluronidase.	Cell migration-inducing and hyaluronan-binding protein.	0.500
HYAL2-2	LOC106580058	ENSSSAP00000095248	ENSSSAP00000099101	Hyaluronidase.	Transmembrane protein 2-like.	0.413
HYAL2-2	LOC106585357	ENSSSAP00000095248	ENSSSAP00000103216	Hyaluronidase.	Transmembrane protein 2-like.	0.413
HYAL2-2	LOC106585357-2	ENSSSAP00000095248	ENSSSAP00000066516	Hyaluronidase.	Transmembrane protein 2-like.	0.413
LOC100136559	LOC106563563	ENSSSAP00000004983	ENSSSAP00000109831	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
LOC100136559	LOC106613337	ENSSSAP00000004983	ENSSSAP00000053777	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC106561029	CEMIP	ENSSSAP00000110362	ENSSSAP00000018328	Hyaluronidase.	Cell migration-inducing and hyaluronan-binding protein.	0.572
LOC106563563	LOC100136559	ENSSSAP00000109831	ENSSSAP00000004983	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.900
LOC106563563	LOC106613337	ENSSSAP00000109831	ENSSSAP00000053777	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC106565981	CEMIP	ENSSSAP00000030943	ENSSSAP00000018328	Hyaluronidase.	Cell migration-inducing and hyaluronan-binding protein.	0.500