17 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pms1	PMS1 protein homolog 1 isoform X2. (914 aa)
	mlh3	DNA mismatch repair protein Mlh3 isoform X2. (1207 aa)
	mlh1	DNA mismatch repair protein Mlh1. (729 aa)
	mutyh	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (523 aa)
	msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (928 aa)
	LOC106593957	mutS protein homolog 5-like. (476 aa)
	ENSSSAP00000001213	annotation not available (110 aa)
	LOC106605957	mutS protein homolog 5-like. (154 aa)
	ENSSSAP00000011757	annotation not available (274 aa)
	pms2	Mismatch repair endonuclease PMS2 isoform X1. (911 aa)
	msh4	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (906 aa)
	LOC106584663	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (457 aa)
	LOC106584662	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (436 aa)
	LOC106592399	mutS protein homolog 5-like isoform X1. (165 aa)
	LOC106561087	G/T mismatch-specific thymine DNA glycosylase-like isoform X1. (467 aa)
	LOC106584876	Uncharacterized protein LOC106584876. (1240 aa)
	msh6	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1386 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000001213	ENSSSAP00000011757	ENSSSAP00000001213	ENSSSAP00000011757	annotation not available	annotation not available	0.953
ENSSSAP00000001213	LOC106584876	ENSSSAP00000001213	ENSSSAP00000029848	annotation not available	Uncharacterized protein LOC106584876.	0.954
ENSSSAP00000001213	LOC106592399	ENSSSAP00000001213	ENSSSAP00000024229	annotation not available	mutS protein homolog 5-like isoform X1.	0.943
ENSSSAP00000001213	LOC106593957	ENSSSAP00000001213	ENSSSAP00000065771	annotation not available	mutS protein homolog 5-like.	0.943
ENSSSAP00000001213	LOC106605957	ENSSSAP00000001213	ENSSSAP00000005759	annotation not available	mutS protein homolog 5-like.	0.943
ENSSSAP00000001213	mlh1	ENSSSAP00000001213	ENSSSAP00000119639	annotation not available	DNA mismatch repair protein Mlh1.	0.997
ENSSSAP00000001213	mlh3	ENSSSAP00000001213	ENSSSAP00000060993	annotation not available	DNA mismatch repair protein Mlh3 isoform X2.	0.667
ENSSSAP00000001213	msh2	ENSSSAP00000001213	ENSSSAP00000099762	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
ENSSSAP00000001213	msh4	ENSSSAP00000001213	ENSSSAP00000017469	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.953
ENSSSAP00000001213	msh6	ENSSSAP00000001213	ENSSSAP00000040921	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.995
ENSSSAP00000001213	mutyh	ENSSSAP00000001213	ENSSSAP00000101983	annotation not available	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.629
ENSSSAP00000001213	pms1	ENSSSAP00000001213	ENSSSAP00000049332	annotation not available	PMS1 protein homolog 1 isoform X2.	0.688
ENSSSAP00000011757	ENSSSAP00000001213	ENSSSAP00000011757	ENSSSAP00000001213	annotation not available	annotation not available	0.953
ENSSSAP00000011757	LOC106584876	ENSSSAP00000011757	ENSSSAP00000029848	annotation not available	Uncharacterized protein LOC106584876.	0.650
ENSSSAP00000011757	LOC106592399	ENSSSAP00000011757	ENSSSAP00000024229	annotation not available	mutS protein homolog 5-like isoform X1.	0.983
ENSSSAP00000011757	LOC106593957	ENSSSAP00000011757	ENSSSAP00000065771	annotation not available	mutS protein homolog 5-like.	0.985
ENSSSAP00000011757	LOC106605957	ENSSSAP00000011757	ENSSSAP00000005759	annotation not available	mutS protein homolog 5-like.	0.991
ENSSSAP00000011757	mlh1	ENSSSAP00000011757	ENSSSAP00000119639	annotation not available	DNA mismatch repair protein Mlh1.	0.967
ENSSSAP00000011757	mlh3	ENSSSAP00000011757	ENSSSAP00000060993	annotation not available	DNA mismatch repair protein Mlh3 isoform X2.	0.954
ENSSSAP00000011757	msh2	ENSSSAP00000011757	ENSSSAP00000099762	annotation not available	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.694