STRINGSTRING
LOC106607566 LOC106607566 LOC106588661 LOC106588661 LOC106570275 LOC106570275 LOC106607341 LOC106607341 LOC106575212 LOC106575212 LIN28B-2 LIN28B-2 LOC106582250 LOC106582250 LOC106570475 LOC106570475 cnot8 cnot8 mov10l1 mov10l1 LOC106594621 LOC106594621 LOC106594953 LOC106594953 LIMD1 LIMD1 ENSSSAP00000068390 ENSSSAP00000068390 ENSSSAP00000068913 ENSSSAP00000068913 ENSSSAP00000069192 ENSSSAP00000069192 LOC106585979 LOC106585979 LOC106571153 LOC106571153 spout1 spout1 ENSSSAP00000071560 ENSSSAP00000071560 HELZ HELZ LIMD1-2 LIMD1-2 LOC106602420 LOC106602420 cnot6 cnot6 mettl3 mettl3 LOC106567715 LOC106567715 ENSSSAP00000080004 ENSSSAP00000080004 LOC106564866 LOC106564866 ZC3H7B ZC3H7B LOC106582463 LOC106582463 LOC106563918 LOC106563918 LOC106607147 LOC106607147 LOC106560258-2 LOC106560258-2 tdrd1 tdrd1 LOC106561550 LOC106561550 LOC106605111 LOC106605111 mov10 mov10 LOC106580468 LOC106580468 LOC106569767 LOC106569767 thex1 thex1 LOC106585873 LOC106585873 pum2 pum2 LOC106582818 LOC106582818 i2c3 i2c3 LOC106570868 LOC106570868 disp2 disp2 LOC106588242 LOC106588242 LOC106586253 LOC106586253 LOC106564661 LOC106564661 LOC106574282 LOC106574282 LOC106565658 LOC106565658 LOC106589781 LOC106589781 LOC106588780 LOC106588780 LOC106570129 LOC106570129 LOC106588472 LOC106588472 zar1 zar1 LOC106586484 LOC106586484 dhx9 dhx9 LOC106565348 LOC106565348 LOC100196839 LOC100196839 pum1 pum1 LOC106583084 LOC106583084 LOC106605151 LOC106605151 LOC106583270 LOC106583270 LOC106604834 LOC106604834 ENSSSAP00000052115 ENSSSAP00000052115 LIN28B LIN28B LOC106567872 LOC106567872 henmt1 henmt1 ENSSSAP00000049389 ENSSSAP00000049389 NCBP1 NCBP1 LOC106560426 LOC106560426 LOC106611069 LOC106611069 LOC106598466 LOC106598466 LOC100380868 LOC100380868 cnot9 cnot9 LOC106573969 LOC106573969 LOC106570646 LOC106570646 ncbp2 ncbp2 LOC106605131 LOC106605131 LOC106578158 LOC106578158 LOC106577795 LOC106577795 ENSSSAP00000033895 ENSSSAP00000033895 LOC106610980 LOC106610980 LOC106590917 LOC106590917 ddx6 ddx6 z3h7a z3h7a LOC106587198 LOC106587198 ENSSSAP00000030101 ENSSSAP00000030101 snd1 snd1 SNIP1 SNIP1 LOC106589538 LOC106589538 TSNAX TSNAX LOC106577487 LOC106577487 LOC106584061 LOC106584061 LOC106603397 LOC106603397 zar1l zar1l LOC106608849 LOC106608849 LOC106607557 LOC106607557 LOC106606600 LOC106606600 nbp1a nbp1a LOC106563692 LOC106563692 adar adar LOC106589087 LOC106589087 LOC106585679 LOC106585679 LOC106603627 LOC106603627 tarbp2 tarbp2 LOC106603492 LOC106603492 LOC106611868 LOC106611868 LOC106575761 LOC106575761 LOC106606066 LOC106606066 LOC106609422 LOC106609422 LOC106605696 LOC106605696 MARF1 MARF1 LOC106611270 LOC106611270 ENSSSAP00000005003 ENSSSAP00000005003 nrde2 nrde2 LOC106609593 LOC106609593 LOC106601242 LOC106601242 XPO5 XPO5 LOC106601229 LOC106601229 LOC106585758 LOC106585758 LOC106599786 LOC106599786 LOC106602922 LOC106602922 ENSSSAP00000001727 ENSSSAP00000001727 DGCR8 DGCR8 piwil1 piwil1 drosha drosha LOC106561350 LOC106561350 EIF4ENIF1 EIF4ENIF1 LOC106582737 LOC106582737 LOC106583545 LOC106583545 LOC106570038 LOC106570038 ENSSSAP00000056537 ENSSSAP00000056537 ENSSSAP00000056542 ENSSSAP00000056542 tdrd12 tdrd12 ENSSSAP00000058286 ENSSSAP00000058286
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC106607566Pumilio homolog 2-like isoform X5. (1211 aa)
LOC106588661Protein lin-28 homolog A-like isoform X3. (200 aa)
LOC106570275Protein lin-28 homolog A-like isoform X2. (202 aa)
LOC106607341Zinc finger CCCH domain-containing protein 7A-like isoform X1. (1019 aa)
LOC106575212Cell differentiation protein RCD1 homolog isoform X1. (301 aa)
LIN28B-2Protein lin-28 homolog A-like isoform X1. (300 aa)
LOC106582250CCR4-NOT transcription complex subunit 11 isoform X1. (449 aa)
LOC106570475Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (893 aa)
cnot8CCR4-NOT transcription complex subunit 8. (285 aa)
mov10l1Putative helicase Mov10l1 isoform X1. (1181 aa)
LOC106594621Trinucleotide repeat-containing gene 6A protein-like. (1076 aa)
LOC106594953Meiosis arrest female protein 1 homolog isoform X3. (1153 aa)
LIMD1Wilms tumor protein 1-interacting protein-like isoform X1. (682 aa)
ENSSSAP00000068390annotation not available (1185 aa)
ENSSSAP00000068913annotation not available (98 aa)
ENSSSAP00000069192annotation not available (920 aa)
LOC106585979LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
LOC106571153Protein lin-28 homolog B-like isoform X3. (231 aa)
spout1CI114 protein. (398 aa)
ENSSSAP00000071560annotation not available (206 aa)
HELZHelicase with zinc finger. (1618 aa)
LIMD1-2LIM domain-containing protein 1-like. (664 aa)
LOC106602420Endoribonuclease Dicer-like isoform X1; Belongs to the helicase family. Dicer subfamily. (1995 aa)
cnot6CCR4-NOT transcription complex, subunit 6 isoform X2. (557 aa)
mettl3N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (590 aa)
LOC106567715Peptidylprolyl isomerase. (326 aa)
ENSSSAP00000080004CCR4-NOT transcription complex, subunit 1. (2324 aa)
LOC106564866Putative tRNA pseudouridine synthase Pus10 isoform X2. (539 aa)
ZC3H7BZinc finger CCCH domain-containing protein 7B-like. (1002 aa)
LOC106582463Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (308 aa)
LOC106563918Nuclear pore complex protein Nup155-like isoform X1. (1340 aa)
LOC106607147Trinucleotide repeat-containing gene 6B protein-like. (1927 aa)
LOC106560258-2Zygote arrest protein 1-like isoform X2. (351 aa)
tdrd1Tudor domain-containing protein 1 isoform X2. (1191 aa)
LOC106561550Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1-like. (529 aa)
LOC106605111Protein lin-28 homolog A-like isoform X1. (202 aa)
mov10Helicase MOV-10. (1023 aa)
LOC106580468Microprocessor complex subunit DGCR8-like. (798 aa)
LOC106569767Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (878 aa)
thex1Histone mRNA 3-exonuclease 1. (346 aa)
LOC106585873CCR4-NOT transcription complex subunit 6-like isoform X1. (600 aa)
pum2Pumilio homolog 2 isoform X2. (1211 aa)
LOC106582818Protein argonaute-1 isoform X7; Belongs to the argonaute family. (903 aa)
i2c3Eukaryotic translation initiation factor 2C 3. (889 aa)
LOC106570868CCR4-NOT transcription complex subunit 6-like isoform X1. (570 aa)
disp2Protein dispatched homolog 2. (1504 aa)
LOC106588242Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (492 aa)
LOC106586253Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (308 aa)
LOC106564661Trinucleotide repeat-containing gene 6C protein-like isoform X1. (2034 aa)
LOC106574282Cell differentiation protein RCD1 homolog isoform X2. (297 aa)
LOC106565658Serine/arginine-rich splicing factor 3. (272 aa)
LOC106589781Exportin-5-like. (1248 aa)
LOC106588780E3 ubiquitin-protein ligase TRIM71-like. (815 aa)
LOC106570129Probable ATP-dependent RNA helicase ddx6 isoform X1; Belongs to the DEAD box helicase family. (490 aa)
LOC106588472Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (891 aa)
zar1Zygote arrest protein 1. (333 aa)
LOC106586484CCR4-NOT transcription complex subunit 11-like isoform X1. (482 aa)
dhx9ATP-dependent RNA helicase A isoform X1. (1329 aa)
LOC106565348Serine/arginine-rich splicing factor 3-like. (172 aa)
LOC100196839Eukaryotic translation initiation factor 4E transporter isoform X2. (992 aa)
pum1Pumilio homolog 1 isoform X1. (1208 aa)
LOC106583084Serine/arginine-rich splicing factor 3 isoform X1. (170 aa)
LOC106605151Protein argonaute-3-like. (922 aa)
LOC106583270Protein lin-28 homolog A-like isoform X1. (202 aa)
LOC106604834CCR4-NOT transcription complex subunit 6-like. (568 aa)
ENSSSAP00000052115Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (345 aa)
LIN28BProtein lin-28 homolog A-like isoform X1. (285 aa)
LOC106567872Serrate RNA effector molecule homolog isoform X1. (936 aa)
henmt1Small RNA 2'-O-methyltransferase. (427 aa)
ENSSSAP00000049389Argonaute RISC catalytic component 2. (871 aa)
NCBP1Nuclear cap-binding protein subunit 1-like isoform X1. (796 aa)
LOC106560426Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
LOC106611069Exonuclease 3'-5' domain-containing protein 1-like. (601 aa)
LOC106598466Putative ATP-dependent RNA helicase TDRD9. (1342 aa)
LOC100380868Terminal uridylyltransferase 7. (897 aa)
cnot9Cell differentiation protein RCD1 homolog isoform X1. (326 aa)
LOC106573969Double-stranded RNA-specific adenosine deaminase-like. (696 aa)
LOC106570646E3 ubiquitin-protein ligase TRIM71-like. (824 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (155 aa)
LOC106605131Smad nuclear-interacting protein 1-like. (395 aa)
LOC106578158Pumilio homolog 1-like. (128 aa)
LOC106577795LIM domain-containing protein ajuba-like isoform X2. (719 aa)
ENSSSAP00000033895annotation not available (670 aa)
LOC106610980Putative ATP-dependent RNA helicase TDRD9 isoform X3. (1339 aa)
LOC106590917Terminal uridylyltransferase 7-like. (217 aa)
ddx6Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (493 aa)
z3h7aZinc finger CCCH domain-containing protein 7A isoform X2. (1008 aa)
LOC106587198Trinucleotide repeat-containing gene 6C protein-like isoform X1. (2015 aa)
ENSSSAP00000030101annotation not available (119 aa)
snd1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (712 aa)
SNIP1Smad nuclear-interacting protein 1-like. (390 aa)
LOC106589538Trinucleotide repeat-containing gene 6B protein-like isoform X4. (2120 aa)
TSNAXTranslin-associated protein X. (164 aa)
LOC106577487Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
LOC106584061Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
LOC106603397Serrate RNA effector molecule homolog. (936 aa)
zar1lZAR1-like protein. (328 aa)
LOC106608849LIM domain-containing protein ajuba-like. (714 aa)
LOC106607557Protein lin-28 homolog A-like isoform X1. (271 aa)
LOC106606600Trinucleotide repeat-containing gene 6C protein-like isoform X3. (1969 aa)
nbp1aNuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense-mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5'-end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U sn [...] (796 aa)
LOC1065636923'-5' exoribonuclease 1-like isoform X1. (337 aa)
adarDouble-stranded RNA-specific adenosine deaminase. (1358 aa)
LOC106589087Meiosis arrest female protein 1 homolog isoform X1. (1251 aa)
LOC106585679Probable helicase with zinc finger domain isoform X3. (2010 aa)
LOC106603627Inactive peptidyl-prolyl cis-trans isomerase FKBP6-like. (251 aa)
tarbp2RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (347 aa)
LOC106603492CCR4-NOT transcription complex subunit 7 isoform X2. (300 aa)
LOC106611868CCR4-NOT transcription complex subunit 6-like isoform X1. (583 aa)
LOC106575761CCR4-NOT transcription complex subunit 10-like isoform X6. (734 aa)
LOC106606066E3 ubiquitin-protein ligase TRIM71-like. (818 aa)
LOC106609422Trinucleotide repeat-containing gene 6B protein-like isoform X4. (2094 aa)
LOC106605696Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
MARF1Meiosis arrest female protein 1 homolog. (1588 aa)
LOC106611270Endoribonuclease Dicer-like; Belongs to the helicase family. Dicer subfamily. (2146 aa)
ENSSSAP00000005003annotation not available (265 aa)
nrde2Protein NRDE2 homolog isoform X1. (1194 aa)
LOC106609593Staphylococcal nuclease domain-containing protein 1-like. (178 aa)
LOC106601242Zinc finger CCCH domain-containing protein 7B-like. (1019 aa)
XPO5Exportin-5-like. (1203 aa)
LOC106601229Trinucleotide repeat-containing gene 6B protein-like isoform X1. (1928 aa)
LOC106585758Putative tRNA pseudouridine synthase Pus10 isoform X1. (539 aa)
LOC106599786Exonuclease 3'-5' domain-containing protein 1-like isoform X2. (275 aa)
LOC106602922CCR4-NOT transcription complex subunit 6-like. (560 aa)
ENSSSAP00000001727annotation not available (1667 aa)
DGCR8Microprocessor complex subunit DGCR8 isoform X2. (805 aa)
piwil1Piwi-like protein 1; Belongs to the argonaute family. (873 aa)
droshaRibonuclease 3 isoform X1. (1437 aa)
LOC106561350CCR4-NOT transcription complex subunit 1-like isoform X11. (2376 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E transporter-like isoform X2. (1020 aa)
LOC106582737Putative helicase mov-10-B.1. (990 aa)
LOC106583545Serine/arginine-rich splicing factor 3-like. (226 aa)
LOC106570038Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (887 aa)
ENSSSAP00000056537annotation not available (331 aa)
ENSSSAP00000056542Pumilio RNA-binding family. (337 aa)
tdrd12Putative ATP-dependent RNA helicase TDRD12. (1536 aa)
ENSSSAP00000058286Pumilio RNA-binding family. (71 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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