30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106598344	Apolipoprotein D-like; Belongs to the calycin superfamily. Lipocalin family. (184 aa)
	neum	Neuromodulin. (249 aa)
	ENSSSAP00000022915	5-methyltetrahydrofolate--homocysteine methyltransferase. (265 aa)
	LOC106581613	E3 ubiquitin-protein ligase MYCBP2-like. (3720 aa)
	LOC100380858	E3 ubiquitin-protein ligase MYCBP2 isoform X21. (4749 aa)
	mtr	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1153 aa)
	LOC106572101	Laminin subunit beta-2-like isoform X3. (1785 aa)
	LOC106569075	tenascin-R-like isoform X1. (1380 aa)
	LOC106609474	Achaete-scute homolog 1a-like. (194 aa)
	CSPG5	Chondroitin sulfate proteoglycan 5-like isoform X4. (604 aa)
	LOC106588805	Chondroitin sulfate proteoglycan 5-like isoform X2. (640 aa)
	LOC106572830	Transcription factor AP-1-like. (353 aa)
	LOC106573246	Laminin subunit beta-1-like. (1784 aa)
	LOC106580533	Tenascin-like isoform X1. (1869 aa)
	LOC106605341	Chondroitin sulfate proteoglycan 5-like isoform X5. (596 aa)
	LOC106613963	Transcription factor AP-1-like; Belongs to the bZIP family. (327 aa)
	LOC106576285	Achaete-scute homolog 1a. (194 aa)
	NEUROG1	Neurogenin-1-like. (228 aa)
	LOC106584280	Transcription factor AP-1-like isoform X1; Belongs to the bZIP family. (328 aa)
	LOC106612289	Neurogenin-1-like. (218 aa)
	LOC106592895	Methionine synthase-like. (382 aa)
	LOC106568782	Apolipoprotein D-like. (150 aa)
	LOC100380751	Tenascin isoform X1. (1746 aa)
	LOC106568560	Transcription factor AP-1-like. (357 aa)
	LOC106609095	Laminin subunit beta-1-like. (1752 aa)
	mpzl3	Myelin protein zero-like protein 3 isoform X2. (556 aa)
	LOC106567724	Tenascin-like isoform X1. (2389 aa)
	tnr	tenascin-R isoform X1. (1369 aa)
	apod	Apolipoprotein D isoform X1; Belongs to the calycin superfamily. Lipocalin family. (181 aa)
	LOC106590494	Apolipoprotein D-like; Belongs to the calycin superfamily. Lipocalin family. (197 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000022915	LOC106592895	ENSSSAP00000022915	ENSSSAP00000068048	5-methyltetrahydrofolate--homocysteine methyltransferase.	Methionine synthase-like.	0.951
ENSSSAP00000022915	mtr	ENSSSAP00000022915	ENSSSAP00000036881	5-methyltetrahydrofolate--homocysteine methyltransferase.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.901
LOC100380751	LOC106567724	ENSSSAP00000089204	ENSSSAP00000108373	Tenascin isoform X1.	Tenascin-like isoform X1.	0.512
LOC100380751	LOC106569075	ENSSSAP00000089204	ENSSSAP00000041309	Tenascin isoform X1.	tenascin-R-like isoform X1.	0.507
LOC100380751	LOC106580533	ENSSSAP00000089204	ENSSSAP00000053872	Tenascin isoform X1.	Tenascin-like isoform X1.	0.511
LOC100380751	tnr	ENSSSAP00000089204	ENSSSAP00000116217	Tenascin isoform X1.	tenascin-R isoform X1.	0.507
LOC106567724	LOC100380751	ENSSSAP00000108373	ENSSSAP00000089204	Tenascin-like isoform X1.	Tenascin isoform X1.	0.512
LOC106567724	LOC106569075	ENSSSAP00000108373	ENSSSAP00000041309	Tenascin-like isoform X1.	tenascin-R-like isoform X1.	0.507
LOC106567724	LOC106580533	ENSSSAP00000108373	ENSSSAP00000053872	Tenascin-like isoform X1.	Tenascin-like isoform X1.	0.513
LOC106567724	tnr	ENSSSAP00000108373	ENSSSAP00000116217	Tenascin-like isoform X1.	tenascin-R isoform X1.	0.507
LOC106569075	LOC100380751	ENSSSAP00000041309	ENSSSAP00000089204	tenascin-R-like isoform X1.	Tenascin isoform X1.	0.507
LOC106569075	LOC106567724	ENSSSAP00000041309	ENSSSAP00000108373	tenascin-R-like isoform X1.	Tenascin-like isoform X1.	0.507
LOC106569075	LOC106580533	ENSSSAP00000041309	ENSSSAP00000053872	tenascin-R-like isoform X1.	Tenascin-like isoform X1.	0.507
LOC106569075	tnr	ENSSSAP00000041309	ENSSSAP00000116217	tenascin-R-like isoform X1.	tenascin-R isoform X1.	0.510
LOC106576285	LOC106612289	ENSSSAP00000060312	ENSSSAP00000065983	Achaete-scute homolog 1a.	Neurogenin-1-like.	0.516
LOC106576285	NEUROG1	ENSSSAP00000060312	ENSSSAP00000062610	Achaete-scute homolog 1a.	Neurogenin-1-like.	0.516
LOC106580533	LOC100380751	ENSSSAP00000053872	ENSSSAP00000089204	Tenascin-like isoform X1.	Tenascin isoform X1.	0.511
LOC106580533	LOC106567724	ENSSSAP00000053872	ENSSSAP00000108373	Tenascin-like isoform X1.	Tenascin-like isoform X1.	0.513
LOC106580533	LOC106569075	ENSSSAP00000053872	ENSSSAP00000041309	Tenascin-like isoform X1.	tenascin-R-like isoform X1.	0.507
LOC106580533	tnr	ENSSSAP00000053872	ENSSSAP00000116217	Tenascin-like isoform X1.	tenascin-R isoform X1.	0.507