5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSSAP00000025751	annotation not available (80 aa)
	cp075-2	OB DNA-binding domain-containing protein C16orf175 isoform X1. (147 aa)
	LOC106607343	recQ-mediated genome instability protein 2-like. (147 aa)
	rmi1	recQ-mediated genome instability protein 1. (140 aa)
	blm	Bloom syndrome protein isoform X1. (1471 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000025751	LOC106607343	ENSSSAP00000025751	ENSSSAP00000060203	annotation not available	recQ-mediated genome instability protein 2-like.	0.983
ENSSSAP00000025751	blm	ENSSSAP00000025751	ENSSSAP00000110484	annotation not available	Bloom syndrome protein isoform X1.	0.999
ENSSSAP00000025751	cp075-2	ENSSSAP00000025751	ENSSSAP00000031541	annotation not available	OB DNA-binding domain-containing protein C16orf175 isoform X1.	0.983
ENSSSAP00000025751	rmi1	ENSSSAP00000025751	ENSSSAP00000088995	annotation not available	recQ-mediated genome instability protein 1.	0.999
LOC106607343	ENSSSAP00000025751	ENSSSAP00000060203	ENSSSAP00000025751	recQ-mediated genome instability protein 2-like.	annotation not available	0.983
LOC106607343	blm	ENSSSAP00000060203	ENSSSAP00000110484	recQ-mediated genome instability protein 2-like.	Bloom syndrome protein isoform X1.	0.996
LOC106607343	cp075-2	ENSSSAP00000060203	ENSSSAP00000031541	recQ-mediated genome instability protein 2-like.	OB DNA-binding domain-containing protein C16orf175 isoform X1.	0.900
LOC106607343	rmi1	ENSSSAP00000060203	ENSSSAP00000088995	recQ-mediated genome instability protein 2-like.	recQ-mediated genome instability protein 1.	0.999
blm	ENSSSAP00000025751	ENSSSAP00000110484	ENSSSAP00000025751	Bloom syndrome protein isoform X1.	annotation not available	0.999
blm	LOC106607343	ENSSSAP00000110484	ENSSSAP00000060203	Bloom syndrome protein isoform X1.	recQ-mediated genome instability protein 2-like.	0.996
blm	cp075-2	ENSSSAP00000110484	ENSSSAP00000031541	Bloom syndrome protein isoform X1.	OB DNA-binding domain-containing protein C16orf175 isoform X1.	0.996
blm	rmi1	ENSSSAP00000110484	ENSSSAP00000088995	Bloom syndrome protein isoform X1.	recQ-mediated genome instability protein 1.	0.999
cp075-2	ENSSSAP00000025751	ENSSSAP00000031541	ENSSSAP00000025751	OB DNA-binding domain-containing protein C16orf175 isoform X1.	annotation not available	0.983
cp075-2	LOC106607343	ENSSSAP00000031541	ENSSSAP00000060203	OB DNA-binding domain-containing protein C16orf175 isoform X1.	recQ-mediated genome instability protein 2-like.	0.900
cp075-2	blm	ENSSSAP00000031541	ENSSSAP00000110484	OB DNA-binding domain-containing protein C16orf175 isoform X1.	Bloom syndrome protein isoform X1.	0.996
cp075-2	rmi1	ENSSSAP00000031541	ENSSSAP00000088995	OB DNA-binding domain-containing protein C16orf175 isoform X1.	recQ-mediated genome instability protein 1.	0.999
rmi1	ENSSSAP00000025751	ENSSSAP00000088995	ENSSSAP00000025751	recQ-mediated genome instability protein 1.	annotation not available	0.999
rmi1	LOC106607343	ENSSSAP00000088995	ENSSSAP00000060203	recQ-mediated genome instability protein 1.	recQ-mediated genome instability protein 2-like.	0.999
rmi1	blm	ENSSSAP00000088995	ENSSSAP00000110484	recQ-mediated genome instability protein 1.	Bloom syndrome protein isoform X1.	0.999
rmi1	cp075-2	ENSSSAP00000088995	ENSSSAP00000031541	recQ-mediated genome instability protein 1.	OB DNA-binding domain-containing protein C16orf175 isoform X1.	0.999