5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tdrd6	Tudor domain-containing protein 6. (2304 aa)
	LOC106569292	Uncharacterized protein LOC106569292. (810 aa)
	LOC106569294	Uncharacterized protein LOC106569294. (698 aa)
	LOC106590309	Uncharacterized protein LOC106590309. (703 aa)
	tdrd15	Tudor domain-containing protein 15 isoform X2. (1881 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106569292	tdrd15	ENSSSAP00000062561	ENSSSAP00000098161	Uncharacterized protein LOC106569292.	Tudor domain-containing protein 15 isoform X2.	0.409
LOC106569294	tdrd15	ENSSSAP00000062540	ENSSSAP00000098161	Uncharacterized protein LOC106569294.	Tudor domain-containing protein 15 isoform X2.	0.570
LOC106569294	tdrd6	ENSSSAP00000062540	ENSSSAP00000105881	Uncharacterized protein LOC106569294.	Tudor domain-containing protein 6.	0.468
LOC106590309	tdrd15	ENSSSAP00000107941	ENSSSAP00000098161	Uncharacterized protein LOC106590309.	Tudor domain-containing protein 15 isoform X2.	0.468
LOC106590309	tdrd6	ENSSSAP00000107941	ENSSSAP00000105881	Uncharacterized protein LOC106590309.	Tudor domain-containing protein 6.	0.468
tdrd15	LOC106569292	ENSSSAP00000098161	ENSSSAP00000062561	Tudor domain-containing protein 15 isoform X2.	Uncharacterized protein LOC106569292.	0.409
tdrd15	LOC106569294	ENSSSAP00000098161	ENSSSAP00000062540	Tudor domain-containing protein 15 isoform X2.	Uncharacterized protein LOC106569294.	0.570
tdrd15	LOC106590309	ENSSSAP00000098161	ENSSSAP00000107941	Tudor domain-containing protein 15 isoform X2.	Uncharacterized protein LOC106590309.	0.468
tdrd6	LOC106569294	ENSSSAP00000105881	ENSSSAP00000062540	Tudor domain-containing protein 6.	Uncharacterized protein LOC106569294.	0.468
tdrd6	LOC106590309	ENSSSAP00000105881	ENSSSAP00000107941	Tudor domain-containing protein 6.	Uncharacterized protein LOC106590309.	0.468