74 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106599373	Dual specificity testis-specific protein kinase 2-like. (659 aa)
	LOC106582904	DNA-binding protein inhibitor ID-1-like. (130 aa)
	LOC106590795	Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
	LOC106604545	LIM and calponin homology domains-containing protein 1-like isoform X1. (1336 aa)
	ENSSSAP00000009872	Lysophosphatidic acid receptor 1. (259 aa)
	LOC106565791	DNA-binding protein inhibitor ID-1-like. (177 aa)
	SYNPO2	Synaptopodin-2-like isoform X1. (1110 aa)
	LOC106570100	Protein S100; Belongs to the S-100 family. (99 aa)
	rapgef4	Rap guanine nucleotide exchange factor 4 isoform X3. (1026 aa)
	pfn2	Profilin; Belongs to the profilin family. (139 aa)
	LOC106563816	Merlin-like isoform X2. (598 aa)
	SYNPO2-2	Synaptopodin-2-like isoform X1. (1507 aa)
	LOC106567667	Protein phosphatase 1E-like. (622 aa)
	LOC106586832	Regulator of cell cycle RGCC-like. (145 aa)
	tsc1	Hamartin isoform X2. (1227 aa)
	nf2	Merlin. (604 aa)
	LOC106610014	Synaptopodin-2-like. (853 aa)
	LOC106611539	LIM and calponin homology domains-containing protein 1-like isoform X2. (1361 aa)
	LOC106608865	Dual specificity testis-specific protein kinase 2-like isoform X1. (714 aa)
	LOC106590027	Neuropilin; Belongs to the neuropilin family. (927 aa)
	LOC106595830	LIM and calponin homology domains-containing protein 1-like. (120 aa)
	ENSSSAP00000029234	annotation not available (93 aa)
	LOC106567902	Alpha-2-antiplasmin-like isoform X4; Belongs to the serpin family. (437 aa)
	LOC106590901	Protein phosphatase 1F-like. (327 aa)
	itgb1bp1	Integrin beta-1-binding protein 1 isoform X1. (199 aa)
	LOC106575974	Protein S100; Belongs to the S-100 family. (101 aa)
	PROF2	Profilin; Belongs to the profilin family. (97 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2569 aa)
	LPAR1	Lysophosphatidic acid receptor 1. (271 aa)
	LOC106572527	Lysophosphatidic acid receptor 1-like; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	tesk1	Dual specificity testis-specific protein kinase 1 isoform X1. (698 aa)
	LOC106612935	Alpha-2-antiplasmin-like isoform X3; Belongs to the serpin family. (496 aa)
	LOC106606009	Protein S100; Belongs to the S-100 family. (101 aa)
	LOC106608297	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	LOC100136538	Protein S100; Belongs to the S-100 family. (142 aa)
	PFN3	Profilin; Belongs to the profilin family. (126 aa)
	ENSSSAP00000054303	annotation not available (125 aa)
	LOC106603572	Alpha-2-antiplasmin-like; Belongs to the serpin family. (471 aa)
	myoc	Myocilin. (476 aa)
	LOC106588175	Protein S100; Belongs to the S-100 family. (171 aa)
	LOC106569259	Dual specificity testis-specific protein kinase 2-like isoform X1. (659 aa)
	LOC106613972	Myocilin-like isoform X1. (473 aa)
	tgfb3	Transforming growth factor beta 3. (419 aa)
	LOC106599954	Myocilin-like. (249 aa)
	LOC106604157	Synaptopodin-like. (1152 aa)
	LOC106572086	DNA-binding protein inhibitor ID-1-like. (126 aa)
	LOC106565454	Hamartin-like. (1271 aa)
	ENSSSAP00000070189	annotation not available (237 aa)
	ppm1e	Protein phosphatase 1E. (615 aa)
	LOC106593572	Uncharacterized protein LOC106593572 isoform X1. (719 aa)
	LOC106572513	Rap guanine nucleotide exchange factor 3-like isoform X1. (892 aa)
	LOC106600087	Rap guanine nucleotide exchange factor 4-like isoform X1. (999 aa)
	LOC100380649	Hamartin isoform X3. (1273 aa)
	ENSSSAP00000078389	Synaptopodin 2-like b. (1104 aa)
	LOC106571074	Transforming growth factor beta-3-like. (396 aa)
	LOC106585173	BAG family molecular chaperone regulator 4-like. (403 aa)
	LOC106568739	Profilin; Belongs to the profilin family. (139 aa)
	LOC106606232	Synaptopodin 2-like protein. (1230 aa)
	LOC106603405	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (351 aa)
	rgcc	Regulator of cell cycle. (209 aa)
	LOC106568050	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
	LOC106576703	Synaptopodin 2-like protein isoform X1. (1242 aa)
	ctgf	Connective tissue growth factor precursor. (346 aa)
	LOC106603540	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
	MYOC	Myocilin-like. (456 aa)
	LOC106577618	Synaptopodin-2-like. (1914 aa)
	LOC106580575	BAG family molecular chaperone regulator 4-like. (412 aa)
	LOC106571301	Connective tissue growth factor-like. (346 aa)
	WNT11	Wnt family member 11. (268 aa)
	LOC106567945	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
	LOC106567164	Rap guanine nucleotide exchange factor 3-like isoform X1. (906 aa)
	LOC106589413	Synaptopodin 2-like protein isoform X1. (1240 aa)
	LOC106613487	Profilin; Belongs to the profilin family. (139 aa)
	LOC106578544	Neuropilin; Belongs to the neuropilin family. (928 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100380649	LOC106565454	ENSSSAP00000077626	ENSSSAP00000069696	Hamartin isoform X3.	Hamartin-like.	0.901
LOC100380649	LOC106569259	ENSSSAP00000077626	ENSSSAP00000058014	Hamartin isoform X3.	Dual specificity testis-specific protein kinase 2-like isoform X1.	0.430
LOC100380649	LOC106578544	ENSSSAP00000077626	ENSSSAP00000116570	Hamartin isoform X3.	Neuropilin; Belongs to the neuropilin family.	0.490
LOC100380649	LOC106590027	ENSSSAP00000077626	ENSSSAP00000028869	Hamartin isoform X3.	Neuropilin; Belongs to the neuropilin family.	0.490
LOC100380649	LOC106593572	ENSSSAP00000077626	ENSSSAP00000072329	Hamartin isoform X3.	Uncharacterized protein LOC106593572 isoform X1.	0.936
LOC100380649	LOC106599373	ENSSSAP00000077626	ENSSSAP00000117915	Hamartin isoform X3.	Dual specificity testis-specific protein kinase 2-like.	0.430
LOC100380649	LOC106608865	ENSSSAP00000077626	ENSSSAP00000024294	Hamartin isoform X3.	Dual specificity testis-specific protein kinase 2-like isoform X1.	0.430
LOC100380649	mtor	ENSSSAP00000077626	ENSSSAP00000045512	Hamartin isoform X3.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.936
LOC100380649	tesk1	ENSSSAP00000077626	ENSSSAP00000047246	Hamartin isoform X3.	Dual specificity testis-specific protein kinase 1 isoform X1.	0.430
LOC100380649	tsc1	ENSSSAP00000077626	ENSSSAP00000019365	Hamartin isoform X3.	Hamartin isoform X2.	0.902
LOC106563816	nf2	ENSSSAP00000013989	ENSSSAP00000020006	Merlin-like isoform X2.	Merlin.	0.901
LOC106565454	LOC100380649	ENSSSAP00000069696	ENSSSAP00000077626	Hamartin-like.	Hamartin isoform X3.	0.901
LOC106565454	LOC106569259	ENSSSAP00000069696	ENSSSAP00000058014	Hamartin-like.	Dual specificity testis-specific protein kinase 2-like isoform X1.	0.430
LOC106565454	LOC106578544	ENSSSAP00000069696	ENSSSAP00000116570	Hamartin-like.	Neuropilin; Belongs to the neuropilin family.	0.490
LOC106565454	LOC106590027	ENSSSAP00000069696	ENSSSAP00000028869	Hamartin-like.	Neuropilin; Belongs to the neuropilin family.	0.490
LOC106565454	LOC106593572	ENSSSAP00000069696	ENSSSAP00000072329	Hamartin-like.	Uncharacterized protein LOC106593572 isoform X1.	0.936
LOC106565454	LOC106599373	ENSSSAP00000069696	ENSSSAP00000117915	Hamartin-like.	Dual specificity testis-specific protein kinase 2-like.	0.430
LOC106565454	LOC106608865	ENSSSAP00000069696	ENSSSAP00000024294	Hamartin-like.	Dual specificity testis-specific protein kinase 2-like isoform X1.	0.430
LOC106565454	mtor	ENSSSAP00000069696	ENSSSAP00000045512	Hamartin-like.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.936
LOC106565454	tesk1	ENSSSAP00000069696	ENSSSAP00000047246	Hamartin-like.	Dual specificity testis-specific protein kinase 1 isoform X1.	0.430