8 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106593742	Phospholipase A(2). (175 aa)
	ENSSSAP00000009185	annotation not available (164 aa)
	LOC106601151	Phospholipase A(2). (153 aa)
	ENSSSAP00000061152	Zgc:92162. (148 aa)
	LOC106561932	Oxysterols receptor LXR-alpha-like isoform X4. (464 aa)
	nr1h3	Salmo salar nuclear receptor subfamily 1 group H member 3 (nr1h3), mRNA. (470 aa)
	abcg5	ATP-binding cassette sub-family G member 5. (698 aa)
	abcg8	ATP-binding cassette sub-family G member 8. (676 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561932	abcg5	ENSSSAP00000078652	ENSSSAP00000100087	Oxysterols receptor LXR-alpha-like isoform X4.	ATP-binding cassette sub-family G member 5.	0.618
LOC106561932	abcg8	ENSSSAP00000078652	ENSSSAP00000100154	Oxysterols receptor LXR-alpha-like isoform X4.	ATP-binding cassette sub-family G member 8.	0.575
abcg5	LOC106561932	ENSSSAP00000100087	ENSSSAP00000078652	ATP-binding cassette sub-family G member 5.	Oxysterols receptor LXR-alpha-like isoform X4.	0.618
abcg5	abcg8	ENSSSAP00000100087	ENSSSAP00000100154	ATP-binding cassette sub-family G member 5.	ATP-binding cassette sub-family G member 8.	0.999
abcg5	nr1h3	ENSSSAP00000100087	ENSSSAP00000099467	ATP-binding cassette sub-family G member 5.	Salmo salar nuclear receptor subfamily 1 group H member 3 (nr1h3), mRNA.	0.677
abcg8	LOC106561932	ENSSSAP00000100154	ENSSSAP00000078652	ATP-binding cassette sub-family G member 8.	Oxysterols receptor LXR-alpha-like isoform X4.	0.575
abcg8	abcg5	ENSSSAP00000100154	ENSSSAP00000100087	ATP-binding cassette sub-family G member 8.	ATP-binding cassette sub-family G member 5.	0.999
abcg8	nr1h3	ENSSSAP00000100154	ENSSSAP00000099467	ATP-binding cassette sub-family G member 8.	Salmo salar nuclear receptor subfamily 1 group H member 3 (nr1h3), mRNA.	0.672
nr1h3	abcg5	ENSSSAP00000099467	ENSSSAP00000100087	Salmo salar nuclear receptor subfamily 1 group H member 3 (nr1h3), mRNA.	ATP-binding cassette sub-family G member 5.	0.677
nr1h3	abcg8	ENSSSAP00000099467	ENSSSAP00000100154	Salmo salar nuclear receptor subfamily 1 group H member 3 (nr1h3), mRNA.	ATP-binding cassette sub-family G member 8.	0.672