STRINGSTRING
lsm3 lsm3 LOC106570129 LOC106570129 LOC106580186 LOC106580186 LOC106587566 LOC106587566 LOC106588242 LOC106588242 LOC106562375 LOC106562375 LOC106573909 LOC106573909 LOC106587552 LOC106587552 LOC106585853 LOC106585853 ENSSSAP00000090665 ENSSSAP00000090665 EDC3 EDC3 LOC106604687 LOC106604687 LOC106602767 LOC106602767 LOC106573260 LOC106573260 LOC106561533 LOC106561533 EIF4ENIF1 EIF4ENIF1 LOC106561715 LOC106561715 LOC106613629 LOC106613629 LOC100196839 LOC100196839 LOC106613585 LOC106613585 LOC106609972 LOC106609972 ENSSSAP00000036541 ENSSSAP00000036541 ddx6 ddx6 LOC106568923 LOC106568923 LOC106599087 LOC106599087 LOC106596388 LOC106596388 LOC106597766-2 LOC106597766-2 LOC106605696 LOC106605696 ENSSSAP00000008190 ENSSSAP00000008190 LOC106577487 LOC106577487 LOC106573951 LOC106573951 tgfi1 tgfi1 LOC106597766 LOC106597766
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
LOC106570129Probable ATP-dependent RNA helicase ddx6 isoform X1; Belongs to the DEAD box helicase family. (490 aa)
LOC106580186Ataxin-2-like isoform X12. (1012 aa)
LOC106587566Protein LSM14 homolog A-like isoform X2. (448 aa)
LOC106588242Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (492 aa)
LOC106562375Protein LSM14 homolog A-like isoform X2. (452 aa)
LOC106573909U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
LOC106587552Enhancer of mRNA-decapping protein 3-like. (477 aa)
LOC106585853Ataxin-2-like isoform X5. (980 aa)
ENSSSAP00000090665Chromosome 19 open reading frame 54. (275 aa)
EDC3Enhancer of mRNA-decapping protein 3-like. (475 aa)
LOC106604687Nocturnin-like isoform X1. (474 aa)
LOC106602767Protein PAT1 homolog 1-like. (808 aa)
LOC106573260Protein LSM14 homolog A-like isoform X2. (569 aa)
LOC106561533Protein LSM14 homolog A-like isoform X4. (542 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E transporter-like isoform X2. (1020 aa)
LOC106561715Enhancer of mRNA-decapping protein 3-like. (487 aa)
LOC106613629U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
LOC100196839Eukaryotic translation initiation factor 4E transporter isoform X2. (992 aa)
LOC106613585Roquin-1-like isoform X1. (1057 aa)
LOC106609972Protein PAT1 homolog 1-like isoform X1. (812 aa)
ENSSSAP00000036541annotation not available (89 aa)
ddx6Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (493 aa)
LOC106568923Roquin-1-like isoform X2. (1085 aa)
LOC106599087Roquin-1-like isoform X1. (1425 aa)
LOC106596388Nocturnin-like. (405 aa)
LOC106597766-2Nocturnin-like. (405 aa)
LOC106605696Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
ENSSSAP00000008190Nocturnin b. (388 aa)
LOC106577487Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family. (490 aa)
LOC106573951Roquin-1-like isoform X1. (960 aa)
tgfi1Protein PAT1 homolog 2 isoform X1. (595 aa)
LOC106597766Nocturnin-like. (405 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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