(5 nodes) Glial cell apoptotic process network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rb1	Retinoblastoma-associated protein. (910 aa)
	LOC106571462	Tumor necrosis factor receptor superfamily member 21-like. (669 aa)
	casp9	Caspase-9 isoform X1; Belongs to the peptidase C14A family. (450 aa)
	LOC106567147	Caspase-9-like; Belongs to the peptidase C14A family. (456 aa)
	LOC106607875	Tumor necrosis factor receptor superfamily member 21-like. (672 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106567147	casp9	ENSSSAP00000099548	ENSSSAP00000098797	Caspase-9-like; Belongs to the peptidase C14A family.	Caspase-9 isoform X1; Belongs to the peptidase C14A family.	0.900
LOC106571462	LOC106607875	ENSSSAP00000040856	ENSSSAP00000107194	Tumor necrosis factor receptor superfamily member 21-like.	Tumor necrosis factor receptor superfamily member 21-like.	0.901
LOC106607875	LOC106571462	ENSSSAP00000107194	ENSSSAP00000040856	Tumor necrosis factor receptor superfamily member 21-like.	Tumor necrosis factor receptor superfamily member 21-like.	0.901
casp9	LOC106567147	ENSSSAP00000098797	ENSSSAP00000099548	Caspase-9 isoform X1; Belongs to the peptidase C14A family.	Caspase-9-like; Belongs to the peptidase C14A family.	0.900