21 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106561682	Small nuclear ribonucleoprotein F-like. (87 aa)
	LOC106603712	Methylosome subunit pICln-like. (263 aa)
	LOC106570608	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	mep50	Methylosome protein 50 isoform X1. (338 aa)
	LOC106612879	Methylosome subunit pICln-like isoform X3. (241 aa)
	rsmb	Small nuclear ribonucleoprotein-associated protein. (237 aa)
	ENSSSAP00000048006	annotation not available (107 aa)
	LOC106569427	Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (632 aa)
	SNRPD1	Small nuclear ribonucleoprotein D1 polypeptide. (175 aa)
	LOC106576293	Small nuclear ribonucleoprotein F-like. (89 aa)
	ruxe	Small nuclear ribonucleoprotein E. (132 aa)
	LOC106612977	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	LOC106573056	Small nuclear ribonucleoprotein F-like. (87 aa)
	LOC106603799	Small nuclear ribonucleoprotein Sm D2. (121 aa)
	LOC106585463	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	LOC100380736	Protein arginine N-methyltransferase 5. (640 aa)
	LOC106565677	Methylosome protein 50-like. (338 aa)
	ruxe-2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	LOC106581107	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	LOC106563120	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	LOC106581011	Methylosome subunit pICln-like isoform X1. (245 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000048006	LOC106563120	ENSSSAP00000048006	ENSSSAP00000117575	annotation not available	Small nuclear ribonucleoprotein Sm D3.	0.993
ENSSSAP00000048006	LOC106565677	ENSSSAP00000048006	ENSSSAP00000105986	annotation not available	Methylosome protein 50-like.	0.433
ENSSSAP00000048006	LOC106570608	ENSSSAP00000048006	ENSSSAP00000024004	annotation not available	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.996
ENSSSAP00000048006	LOC106581011	ENSSSAP00000048006	ENSSSAP00000121168	annotation not available	Methylosome subunit pICln-like isoform X1.	0.815
ENSSSAP00000048006	LOC106581107	ENSSSAP00000048006	ENSSSAP00000111487	annotation not available	Small nuclear ribonucleoprotein Sm D2.	0.989
ENSSSAP00000048006	LOC106585463	ENSSSAP00000048006	ENSSSAP00000086814	annotation not available	Small nuclear ribonucleoprotein Sm D3.	0.993
ENSSSAP00000048006	LOC106603712	ENSSSAP00000048006	ENSSSAP00000001176	annotation not available	Methylosome subunit pICln-like.	0.807
ENSSSAP00000048006	LOC106603799	ENSSSAP00000048006	ENSSSAP00000081312	annotation not available	Small nuclear ribonucleoprotein Sm D2.	0.989
ENSSSAP00000048006	LOC106612879	ENSSSAP00000048006	ENSSSAP00000039031	annotation not available	Methylosome subunit pICln-like isoform X3.	0.815
ENSSSAP00000048006	LOC106612977	ENSSSAP00000048006	ENSSSAP00000078090	annotation not available	Small nuclear ribonucleoprotein Sm D2.	0.989
ENSSSAP00000048006	SNRPD1	ENSSSAP00000048006	ENSSSAP00000057453	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.996
ENSSSAP00000048006	mep50	ENSSSAP00000048006	ENSSSAP00000033776	annotation not available	Methylosome protein 50 isoform X1.	0.433
ENSSSAP00000048006	rsmb	ENSSSAP00000048006	ENSSSAP00000040657	annotation not available	Small nuclear ribonucleoprotein-associated protein.	0.987
ENSSSAP00000048006	ruxe	ENSSSAP00000048006	ENSSSAP00000065069	annotation not available	Small nuclear ribonucleoprotein E.	0.996
ENSSSAP00000048006	ruxe-2	ENSSSAP00000048006	ENSSSAP00000109915	annotation not available	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
LOC100380736	LOC106563120	ENSSSAP00000092283	ENSSSAP00000117575	Protein arginine N-methyltransferase 5.	Small nuclear ribonucleoprotein Sm D3.	0.827
LOC100380736	LOC106565677	ENSSSAP00000092283	ENSSSAP00000105986	Protein arginine N-methyltransferase 5.	Methylosome protein 50-like.	0.991
LOC100380736	LOC106570608	ENSSSAP00000092283	ENSSSAP00000024004	Protein arginine N-methyltransferase 5.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.837
LOC100380736	LOC106581011	ENSSSAP00000092283	ENSSSAP00000121168	Protein arginine N-methyltransferase 5.	Methylosome subunit pICln-like isoform X1.	0.988
LOC100380736	LOC106581107	ENSSSAP00000092283	ENSSSAP00000111487	Protein arginine N-methyltransferase 5.	Small nuclear ribonucleoprotein Sm D2.	0.524