STRINGSTRING
pum1 pum1 LOC106585758 LOC106585758 LOC106601242 LOC106601242 LOC106611270 LOC106611270 tarbp2 tarbp2 adar adar LOC106583084 LOC106583084 LOC106607557 LOC106607557 LOC106603397 LOC106603397 LOC106584061 LOC106584061 SNIP1 SNIP1 z3h7a z3h7a LOC106590917 LOC106590917 LOC106578158 LOC106578158 LOC106605131 LOC106605131 LOC106573969 LOC106573969 LOC100380868 LOC100380868 LOC106560426 LOC106560426 LOC106567872 LOC106567872 LIN28B LIN28B LOC106583270 LOC106583270 drosha drosha LOC106583545 LOC106583545 LOC106570038 LOC106570038 ENSSSAP00000056537 ENSSSAP00000056537 ENSSSAP00000056542 ENSSSAP00000056542 ENSSSAP00000058286 ENSSSAP00000058286 DGCR8 DGCR8 LOC106607566 LOC106607566 LOC106588661 LOC106588661 LOC106570275 LOC106570275 LOC106607341 LOC106607341 LIN28B-2 LIN28B-2 LOC106585979 LOC106585979 LOC106571153 LOC106571153 spout1 spout1 LOC106602420 LOC106602420 mettl3 mettl3 LOC106564866 LOC106564866 ZC3H7B ZC3H7B LOC106563918 LOC106563918 LOC106605111 LOC106605111 LOC106580468 LOC106580468 pum2 pum2 LOC106565658 LOC106565658 LOC106588472 LOC106588472 LOC106565348 LOC106565348
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pum1Pumilio homolog 1 isoform X1. (1208 aa)
LOC106585758Putative tRNA pseudouridine synthase Pus10 isoform X1. (539 aa)
LOC106601242Zinc finger CCCH domain-containing protein 7B-like. (1019 aa)
LOC106611270Endoribonuclease Dicer-like; Belongs to the helicase family. Dicer subfamily. (2146 aa)
tarbp2RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (347 aa)
adarDouble-stranded RNA-specific adenosine deaminase. (1358 aa)
LOC106583084Serine/arginine-rich splicing factor 3 isoform X1. (170 aa)
LOC106607557Protein lin-28 homolog A-like isoform X1. (271 aa)
LOC106603397Serrate RNA effector molecule homolog. (936 aa)
LOC106584061Terminal uridylyltransferase 4-like isoform X2. (1565 aa)
SNIP1Smad nuclear-interacting protein 1-like. (390 aa)
z3h7aZinc finger CCCH domain-containing protein 7A isoform X2. (1008 aa)
LOC106590917Terminal uridylyltransferase 7-like. (217 aa)
LOC106578158Pumilio homolog 1-like. (128 aa)
LOC106605131Smad nuclear-interacting protein 1-like. (395 aa)
LOC106573969Double-stranded RNA-specific adenosine deaminase-like. (696 aa)
LOC100380868Terminal uridylyltransferase 7. (897 aa)
LOC106560426Terminal uridylyltransferase 4-like isoform X2. (1559 aa)
LOC106567872Serrate RNA effector molecule homolog isoform X1. (936 aa)
LIN28BProtein lin-28 homolog A-like isoform X1. (285 aa)
LOC106583270Protein lin-28 homolog A-like isoform X1. (202 aa)
droshaRibonuclease 3 isoform X1. (1437 aa)
LOC106583545Serine/arginine-rich splicing factor 3-like. (226 aa)
LOC106570038Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (887 aa)
ENSSSAP00000056537annotation not available (331 aa)
ENSSSAP00000056542Pumilio RNA-binding family. (337 aa)
ENSSSAP00000058286Pumilio RNA-binding family. (71 aa)
DGCR8Microprocessor complex subunit DGCR8 isoform X2. (805 aa)
LOC106607566Pumilio homolog 2-like isoform X5. (1211 aa)
LOC106588661Protein lin-28 homolog A-like isoform X3. (200 aa)
LOC106570275Protein lin-28 homolog A-like isoform X2. (202 aa)
LOC106607341Zinc finger CCCH domain-containing protein 7A-like isoform X1. (1019 aa)
LIN28B-2Protein lin-28 homolog A-like isoform X1. (300 aa)
LOC106585979LOW QUALITY PROTEIN: terminal uridylyltransferase 7-like. (1079 aa)
LOC106571153Protein lin-28 homolog B-like isoform X3. (231 aa)
spout1CI114 protein. (398 aa)
LOC106602420Endoribonuclease Dicer-like isoform X1; Belongs to the helicase family. Dicer subfamily. (1995 aa)
mettl3N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (590 aa)
LOC106564866Putative tRNA pseudouridine synthase Pus10 isoform X2. (539 aa)
ZC3H7BZinc finger CCCH domain-containing protein 7B-like. (1002 aa)
LOC106563918Nuclear pore complex protein Nup155-like isoform X1. (1340 aa)
LOC106605111Protein lin-28 homolog A-like isoform X1. (202 aa)
LOC106580468Microprocessor complex subunit DGCR8-like. (798 aa)
pum2Pumilio homolog 2 isoform X2. (1211 aa)
LOC106565658Serine/arginine-rich splicing factor 3. (272 aa)
LOC106588472Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (891 aa)
LOC106565348Serine/arginine-rich splicing factor 3-like. (172 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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