8 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106572920	methyl-CpG-binding protein 2-like isoform X1. (668 aa)
	LOC106566345	methyl-CpG-binding protein 2-like. (680 aa)
	LOC106604959	Fragile X mental retardation protein 1 homolog B-like isoform X2. (599 aa)
	LOC106611992	Fragile X mental retardation protein 1 homolog A-like isoform X4. (593 aa)
	dhx9	ATP-dependent RNA helicase A isoform X1. (1329 aa)
	LOC106586253	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (308 aa)
	tarbp2	RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (347 aa)
	LOC106582463	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog. (308 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106566345	LOC106604959	ENSSSAP00000061807	ENSSSAP00000065736	methyl-CpG-binding protein 2-like.	Fragile X mental retardation protein 1 homolog B-like isoform X2.	0.812
LOC106566345	LOC106611992	ENSSSAP00000061807	ENSSSAP00000066998	methyl-CpG-binding protein 2-like.	Fragile X mental retardation protein 1 homolog A-like isoform X4.	0.812
LOC106566345	dhx9	ENSSSAP00000061807	ENSSSAP00000114830	methyl-CpG-binding protein 2-like.	ATP-dependent RNA helicase A isoform X1.	0.444
LOC106572920	LOC106604959	ENSSSAP00000044090	ENSSSAP00000065736	methyl-CpG-binding protein 2-like isoform X1.	Fragile X mental retardation protein 1 homolog B-like isoform X2.	0.812
LOC106572920	LOC106611992	ENSSSAP00000044090	ENSSSAP00000066998	methyl-CpG-binding protein 2-like isoform X1.	Fragile X mental retardation protein 1 homolog A-like isoform X4.	0.812
LOC106572920	dhx9	ENSSSAP00000044090	ENSSSAP00000114830	methyl-CpG-binding protein 2-like isoform X1.	ATP-dependent RNA helicase A isoform X1.	0.444
LOC106582463	dhx9	ENSSSAP00000082142	ENSSSAP00000114830	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	ATP-dependent RNA helicase A isoform X1.	0.503
LOC106586253	dhx9	ENSSSAP00000101564	ENSSSAP00000114830	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	ATP-dependent RNA helicase A isoform X1.	0.503
LOC106604959	LOC106566345	ENSSSAP00000065736	ENSSSAP00000061807	Fragile X mental retardation protein 1 homolog B-like isoform X2.	methyl-CpG-binding protein 2-like.	0.812
LOC106604959	LOC106572920	ENSSSAP00000065736	ENSSSAP00000044090	Fragile X mental retardation protein 1 homolog B-like isoform X2.	methyl-CpG-binding protein 2-like isoform X1.	0.812
LOC106604959	dhx9	ENSSSAP00000065736	ENSSSAP00000114830	Fragile X mental retardation protein 1 homolog B-like isoform X2.	ATP-dependent RNA helicase A isoform X1.	0.436
LOC106611992	LOC106566345	ENSSSAP00000066998	ENSSSAP00000061807	Fragile X mental retardation protein 1 homolog A-like isoform X4.	methyl-CpG-binding protein 2-like.	0.812
LOC106611992	LOC106572920	ENSSSAP00000066998	ENSSSAP00000044090	Fragile X mental retardation protein 1 homolog A-like isoform X4.	methyl-CpG-binding protein 2-like isoform X1.	0.812
LOC106611992	dhx9	ENSSSAP00000066998	ENSSSAP00000114830	Fragile X mental retardation protein 1 homolog A-like isoform X4.	ATP-dependent RNA helicase A isoform X1.	0.436
dhx9	LOC106566345	ENSSSAP00000114830	ENSSSAP00000061807	ATP-dependent RNA helicase A isoform X1.	methyl-CpG-binding protein 2-like.	0.444
dhx9	LOC106572920	ENSSSAP00000114830	ENSSSAP00000044090	ATP-dependent RNA helicase A isoform X1.	methyl-CpG-binding protein 2-like isoform X1.	0.444
dhx9	LOC106582463	ENSSSAP00000114830	ENSSSAP00000082142	ATP-dependent RNA helicase A isoform X1.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.503
dhx9	LOC106586253	ENSSSAP00000114830	ENSSSAP00000101564	ATP-dependent RNA helicase A isoform X1.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog.	0.503
dhx9	LOC106604959	ENSSSAP00000114830	ENSSSAP00000065736	ATP-dependent RNA helicase A isoform X1.	Fragile X mental retardation protein 1 homolog B-like isoform X2.	0.436
dhx9	LOC106611992	ENSSSAP00000114830	ENSSSAP00000066998	ATP-dependent RNA helicase A isoform X1.	Fragile X mental retardation protein 1 homolog A-like isoform X4.	0.436