STRINGSTRING
topaz1 topaz1 LOC106561926 LOC106561926 LOC106604411 LOC106604411 CASP2 CASP2 LOC106601126 LOC106601126 ENSSSAP00000063903 ENSSSAP00000063903 LOC106607328 LOC106607328 ENSSSAP00000073552 ENSSSAP00000073552 ddb1 ddb1 LOC106576719 LOC106576719
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
topaz1Testis- and ovary-specific PAZ domain-containing protein 1 isoform X1. (2086 aa)
LOC106561926DNA damage-binding protein 1-like isoform X1. (1139 aa)
LOC106604411Synaptonemal complex central element protein 3-like. (89 aa)
CASP2Caspase-2-like; Belongs to the peptidase C14A family. (343 aa)
LOC106601126Apoptosis regulator BAX-like. (225 aa)
ENSSSAP00000063903Caspase 2, apoptosis-related cysteine peptidase. (343 aa)
LOC106607328Apoptosis regulator BAX-like. (194 aa)
ENSSSAP00000073552annotation not available (175 aa)
ddb1Salmo salar DNA damage-binding protein 1 (ddb1), mRNA. (1244 aa)
LOC106576719Caspase-2-like isoform X1; Belongs to the peptidase C14A family. (485 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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