38 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TADA1	Transcriptional adapter 1-like. (334 aa)
	mysm1	Histone H2A deubiquitinase MYSM1. (882 aa)
	LOC106576087	Ataxin-7-like protein 1 isoform X2. (592 aa)
	ENSSSAP00000098924	annotation not available (86 aa)
	ENSSSAP00000061467	annotation not available (324 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	LOC106583024	Ataxin-7-like isoform X1. (889 aa)
	taf12	Transcription initiation factor TFIID subunit 12 isoform X1. (168 aa)
	LOC106613979	Histone H2A deubiquitinase MYSM1-like. (860 aa)
	LOC106583439	Ubiquitin carboxyl-terminal hydrolase. (744 aa)
	LOC106566962	Transcription initiation factor TFIID subunit 10-like. (184 aa)
	LOC106604983	Transcription initiation factor TFIID subunit 12-like. (168 aa)
	ENSSSAP00000070509	annotation not available (69 aa)
	ENSSSAP00000068460	annotation not available (293 aa)
	ENSSSAP00000066809	annotation not available (283 aa)
	LOC106609205	Ataxin-7-like protein 1 isoform X2. (714 aa)
	ENSSSAP00000066153	annotation not available (101 aa)
	ENSSSAP00000064944	annotation not available (81 aa)
	trrap	Transformation/transcription domain-associated protein isoform X8; Belongs to the PI3/PI4-kinase family. (3781 aa)
	taf6l	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L. (637 aa)
	LOC106588642	Transcription initiation factor TFIID subunit 5-like. (747 aa)
	LOC106565127	Ataxin-7-like protein 2. (766 aa)
	LOC106583938	SAGA-associated factor 29 homolog. (323 aa)
	atxn7	Ataxin-7. (878 aa)
	supt3h	Transcription initiation protein SPT3 homolog. (349 aa)
	sgf29	SAGA-associated factor 29 homolog isoform X1. (302 aa)
	ENSSSAP00000008487	annotation not available (81 aa)
	TAF5	Transcription initiation factor TFIID subunit 5-like. (757 aa)
	LOC106572212	Transcription initiation factor TFIID subunit 10-like isoform X1. (230 aa)
	supt7l	STAGA complex 65 subunit gamma. (426 aa)
	LOC106596672	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (192 aa)
	ENSSSAP00000023043	annotation not available (81 aa)
	ENSSSAP00000023835	annotation not available (81 aa)
	LOC106583475	Ataxin-7-like protein 2. (733 aa)
	LOC106560681	Transcription initiation factor TFIID subunit 6-like. (689 aa)
	LOC106565169	Ubiquitin carboxyl-terminal hydrolase. (737 aa)
	LOC106602816	Transcription initiation factor TFIID subunit 6-like. (644 aa)
	LOC106596672-2	Ataxin-7-like protein 3. (200 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000008487	ENSSSAP00000061467	ENSSSAP00000008487	ENSSSAP00000061467	annotation not available	annotation not available	0.722
ENSSSAP00000008487	ENSSSAP00000066153	ENSSSAP00000008487	ENSSSAP00000066153	annotation not available	annotation not available	0.735
ENSSSAP00000008487	ENSSSAP00000066809	ENSSSAP00000008487	ENSSSAP00000066809	annotation not available	annotation not available	0.800
ENSSSAP00000008487	ENSSSAP00000068460	ENSSSAP00000008487	ENSSSAP00000068460	annotation not available	annotation not available	0.800
ENSSSAP00000008487	ENSSSAP00000098924	ENSSSAP00000008487	ENSSSAP00000098924	annotation not available	annotation not available	0.735
ENSSSAP00000008487	LOC106560681	ENSSSAP00000008487	ENSSSAP00000032374	annotation not available	Transcription initiation factor TFIID subunit 6-like.	0.956
ENSSSAP00000008487	LOC106565127	ENSSSAP00000008487	ENSSSAP00000118153	annotation not available	Ataxin-7-like protein 2.	0.735
ENSSSAP00000008487	LOC106566962	ENSSSAP00000008487	ENSSSAP00000072891	annotation not available	Transcription initiation factor TFIID subunit 10-like.	0.954
ENSSSAP00000008487	LOC106572212	ENSSSAP00000008487	ENSSSAP00000015019	annotation not available	Transcription initiation factor TFIID subunit 10-like isoform X1.	0.954
ENSSSAP00000008487	LOC106576087	ENSSSAP00000008487	ENSSSAP00000098930	annotation not available	Ataxin-7-like protein 1 isoform X2.	0.735
ENSSSAP00000008487	LOC106583024	ENSSSAP00000008487	ENSSSAP00000087934	annotation not available	Ataxin-7-like isoform X1.	0.735
ENSSSAP00000008487	LOC106583475	ENSSSAP00000008487	ENSSSAP00000027906	annotation not available	Ataxin-7-like protein 2.	0.735
ENSSSAP00000008487	LOC106583938	ENSSSAP00000008487	ENSSSAP00000101736	annotation not available	SAGA-associated factor 29 homolog.	0.800
ENSSSAP00000008487	LOC106596672	ENSSSAP00000008487	ENSSSAP00000021722	annotation not available	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.720
ENSSSAP00000008487	LOC106596672-2	ENSSSAP00000008487	ENSSSAP00000049643	annotation not available	Ataxin-7-like protein 3.	0.720
ENSSSAP00000008487	LOC106602816	ENSSSAP00000008487	ENSSSAP00000046806	annotation not available	Transcription initiation factor TFIID subunit 6-like.	0.956
ENSSSAP00000008487	LOC106604983	ENSSSAP00000008487	ENSSSAP00000071737	annotation not available	Transcription initiation factor TFIID subunit 12-like.	0.959
ENSSSAP00000008487	LOC106609205	ENSSSAP00000008487	ENSSSAP00000066178	annotation not available	Ataxin-7-like protein 1 isoform X2.	0.735
ENSSSAP00000008487	LOC106613979	ENSSSAP00000008487	ENSSSAP00000076363	annotation not available	Histone H2A deubiquitinase MYSM1-like.	0.583
ENSSSAP00000008487	TADA1	ENSSSAP00000008487	ENSSSAP00000099315	annotation not available	Transcriptional adapter 1-like.	0.722