(45 nodes) mRNA 3-UTR AU-rich region binding network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106587420	Cleavage and polyadenylation specificity factor subunit 5-like. (248 aa)
	exos4	Exosome complex exonuclease RRP41. (245 aa)
	LOC106606043	RNA-binding protein 24-B-like. (128 aa)
	tiar	Salmo salar Nucleolysin TIAR (tiar), mRNA. (429 aa)
	tisb	Butyrate response factor 1. (364 aa)
	LOC106612716	Zinc finger protein 36, C3H1 type-like 2. (400 aa)
	LOC106608164	Zinc finger protein 36, C3H1 type-like 1 isoform X1. (346 aa)
	LOC106574475	ELAV-like protein; Belongs to the RRM elav family. (357 aa)
	exosc8	Exosome complex component RRP43. (704 aa)
	LOC106570221	Cleavage and polyadenylation specificity factor subunit 1-like. (1473 aa)
	zc3h12a	Ribonuclease ZC3H12A. (615 aa)
	LOC106574070	ELAV-like protein; Belongs to the RRM elav family. (374 aa)
	ENSSSAP00000021569	annotation not available (128 aa)
	ENSSSAP00000022354	annotation not available (128 aa)
	LOC106562230	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (230 aa)
	LOC106576826	Nucleolysin TIAR-like isoform X1. (432 aa)
	LOC106568058	Nucleolysin TIA-1 isoform p40-like isoform X2. (390 aa)
	LOC106588592	Cleavage and polyadenylation specificity factor subunit 1-like. (1477 aa)
	LOC106613578	ELAV-like protein; Belongs to the RRM elav family. (380 aa)
	LOC106580729	Zinc finger protein 36, C3H1 type-like 1. (400 aa)
	LOC106605192	Zinc finger protein 36, C3H1 type-like 2-A. (429 aa)
	LOC106601349	Interleukin enhancer-binding factor 3 homolog isoform X1. (844 aa)
	ilf3	Interleukin enhancer-binding factor 3 homolog isoform X1. (843 aa)
	LOC106583205	Ribonuclease ZC3H12A-like. (671 aa)
	LOC106588906	RNA-binding protein 24. (233 aa)
	ENSSSAP00000061457	annotation not available (128 aa)
	rbm24	RNA-binding protein 24. (232 aa)
	LOC106560740	Cytoplasmic polyadenylation element-binding protein 1-A-like. (600 aa)
	LOC106611287	Zinc finger protein 36, C3H1 type-like 1. (395 aa)
	LOC106589020	Ribonuclease ZC3H12A-like. (700 aa)
	dhx36	ATP-dependent RNA helicase DHX36. (780 aa)
	LOC106560248	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2. (710 aa)
	nudt21	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
	LOC106605117	Ribonuclease ZC3H12A-like. (662 aa)
	LOC106562788-2	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1. (604 aa)
	zfp36l1	Zinc finger protein 36, C3H1 type-like 1. (421 aa)
	ELAVL1	ELAV-like protein; Belongs to the RRM elav family. (370 aa)
	LOC106563050	Nucleolysin TIA-1 isoform p40-like isoform X2. (400 aa)
	LOC106602708	Zinc finger protein 36, C3H1 type-like 1. (385 aa)
	LOC106562788	Cytoplasmic polyadenylation element-binding protein 1-like isoform X1. (591 aa)
	LOC106580505	Nucleolysin TIA-1 isoform p40-like isoform X1. (396 aa)
	LOC106580723	Tristetraprolin-like. (364 aa)
	LOC106584219	Cytoplasmic polyadenylation element-binding protein 2-like isoform X2. (687 aa)
	LOC106585115	Nucleolysin TIA-1 isoform p40-like. (404 aa)
	ENSSSAP00000120070	annotation not available (229 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL1	ENSSSAP00000021569	ENSSSAP00000102822	ENSSSAP00000021569	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.560
ELAVL1	ENSSSAP00000022354	ENSSSAP00000102822	ENSSSAP00000022354	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.560
ELAVL1	ENSSSAP00000061457	ENSSSAP00000102822	ENSSSAP00000061457	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.560
ELAVL1	ENSSSAP00000120070	ENSSSAP00000102822	ENSSSAP00000120070	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.504
ELAVL1	LOC106562230	ENSSSAP00000102822	ENSSSAP00000025512	ELAV-like protein; Belongs to the RRM elav family.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.504
ELAVL1	LOC106563050	ENSSSAP00000102822	ENSSSAP00000104626	ELAV-like protein; Belongs to the RRM elav family.	Nucleolysin TIA-1 isoform p40-like isoform X2.	0.453
ELAVL1	LOC106568058	ENSSSAP00000102822	ENSSSAP00000035363	ELAV-like protein; Belongs to the RRM elav family.	Nucleolysin TIA-1 isoform p40-like isoform X2.	0.454
ELAVL1	LOC106576826	ENSSSAP00000102822	ENSSSAP00000034316	ELAV-like protein; Belongs to the RRM elav family.	Nucleolysin TIAR-like isoform X1.	0.455
ELAVL1	LOC106580505	ENSSSAP00000102822	ENSSSAP00000110720	ELAV-like protein; Belongs to the RRM elav family.	Nucleolysin TIA-1 isoform p40-like isoform X1.	0.451
ELAVL1	LOC106585115	ENSSSAP00000102822	ENSSSAP00000116470	ELAV-like protein; Belongs to the RRM elav family.	Nucleolysin TIA-1 isoform p40-like.	0.449
ELAVL1	LOC106587420	ENSSSAP00000102822	ENSSSAP00000120115	ELAV-like protein; Belongs to the RRM elav family.	Cleavage and polyadenylation specificity factor subunit 5-like.	0.504
ELAVL1	LOC106588906	ENSSSAP00000102822	ENSSSAP00000046257	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding protein 24.	0.512
ELAVL1	LOC106601349	ENSSSAP00000102822	ENSSSAP00000043231	ELAV-like protein; Belongs to the RRM elav family.	Interleukin enhancer-binding factor 3 homolog isoform X1.	0.578
ELAVL1	LOC106606043	ENSSSAP00000102822	ENSSSAP00000006073	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding protein 24-B-like.	0.560
ELAVL1	ilf3	ENSSSAP00000102822	ENSSSAP00000044003	ELAV-like protein; Belongs to the RRM elav family.	Interleukin enhancer-binding factor 3 homolog isoform X1.	0.578
ELAVL1	nudt21	ENSSSAP00000102822	ENSSSAP00000083096	ELAV-like protein; Belongs to the RRM elav family.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.504
ELAVL1	rbm24	ENSSSAP00000102822	ENSSSAP00000064415	ELAV-like protein; Belongs to the RRM elav family.	RNA-binding protein 24.	0.516
ELAVL1	tiar	ENSSSAP00000102822	ENSSSAP00000007209	ELAV-like protein; Belongs to the RRM elav family.	Salmo salar Nucleolysin TIAR (tiar), mRNA.	0.456
ENSSSAP00000021569	ELAVL1	ENSSSAP00000021569	ENSSSAP00000102822	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.560
ENSSSAP00000021569	LOC106574070	ENSSSAP00000021569	ENSSSAP00000020702	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.524