18 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106587772	Leucine-rich repeat serine/threonine-protein kinase 1-like. (338 aa)
	LOC106583686	Tyrosine-protein kinase. (548 aa)
	LOC106592211	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106582173	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (270 aa)
	LOC106567107	V-type proton ATPase subunit S1-like. (463 aa)
	LOC106567112	Tyrosine-protein kinase. (553 aa)
	LOC106589575	Extracellular serine/threonine protein kinase FAM20C-like. (635 aa)
	LOC106572626	Tyrosine-protein kinase. (540 aa)
	ENSSSAP00000050583	annotation not available (395 aa)
	LOC106609787	Extracellular serine/threonine protein kinase FAM20C-like. (566 aa)
	LOC106601828	Extracellular serine/threonine protein kinase FAM20C-like. (534 aa)
	LOC106591936	Leucine-rich repeat serine/threonine-protein kinase 1-like. (584 aa)
	LOC106566310	V-type proton ATPase subunit S1-like. (490 aa)
	tnfsf11	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family. (284 aa)
	LOC106565074	Tyrosine-protein kinase. (588 aa)
	LOC106575455	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106582173-2	Tumor necrosis factor ligand superfamily member 11-like. (270 aa)
	ENSSSAP00000085883	annotation not available (242 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106565074	LOC106572626	ENSSSAP00000107801	ENSSSAP00000049248	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC106565074	LOC106583686	ENSSSAP00000107801	ENSSSAP00000071876	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC106566310	LOC106567107	ENSSSAP00000033732	ENSSSAP00000034986	V-type proton ATPase subunit S1-like.	V-type proton ATPase subunit S1-like.	0.901
LOC106567107	LOC106566310	ENSSSAP00000034986	ENSSSAP00000033732	V-type proton ATPase subunit S1-like.	V-type proton ATPase subunit S1-like.	0.901
LOC106572626	LOC106565074	ENSSSAP00000049248	ENSSSAP00000107801	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC106572626	LOC106583686	ENSSSAP00000049248	ENSSSAP00000071876	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC106583686	LOC106565074	ENSSSAP00000071876	ENSSSAP00000107801	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC106583686	LOC106572626	ENSSSAP00000071876	ENSSSAP00000049248	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900