32 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	faap24	Fanconi anemia-associated protein of 24 kDa. (215 aa)
	xpa	DNA-repair protein complementing XP-A cells homolog. (274 aa)
	dclre1b	5' exonuclease Apollo isoform X1. (704 aa)
	fancc	Fanconi anemia group C protein isoform X1. (657 aa)
	exo5	Exonuclease V. (322 aa)
	ENSSSAP00000053097	annotation not available (407 aa)
	fancb	Fanconi anemia group B protein isoform X3. (767 aa)
	ENSSSAP00000042990	annotation not available (1200 aa)
	rad51	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (340 aa)
	FANCA	Fanconi anemia group A protein isoform X4. (1460 aa)
	ercc4	DNA repair endonuclease XPF. (911 aa)
	rad51d	DNA repair protein RAD51 homolog 4. (336 aa)
	LOC106564263	Transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family. (569 aa)
	LOC106607888	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
	ENSSSAP00000005631	annotation not available (94 aa)
	LOC106569430	Transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family. (817 aa)
	LOC106601646	Uncharacterized protein C17orf53 homolog isoform X1. (502 aa)
	LOC106589789	Structure-specific endonuclease subunit SLX4-like isoform X1. (1073 aa)
	ENSSSAP00000000810	annotation not available (258 aa)
	ENSSSAP00000079966	annotation not available (1325 aa)
	LOC106562928	Transitional endoplasmic reticulum ATPase-like. (834 aa)
	LOC106580289	Transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family. (711 aa)
	dclre1a	DNA cross-link repair 1A protein. (898 aa)
	fan1	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (1075 aa)
	LOC106585012	Transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family. (819 aa)
	fancg	Fanconi anemia group G protein isoform X3. (449 aa)
	neil3	Endonuclease 8-like 3. (589 aa)
	xpa-2	DNA repair protein complementing XP-A cells. (278 aa)
	ercc1	DNA excision repair protein ERCC-1. (383 aa)
	LOC106608117	Uncharacterized protein LOC106608117. (1321 aa)
	fancl	E3 ubiquitin-protein ligase FANCL isoform X1. (389 aa)
	fancd2	Fanconi anemia group D2 protein. (1490 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000000810	ENSSSAP00000042990	ENSSSAP00000000810	ENSSSAP00000042990	annotation not available	annotation not available	0.952
ENSSSAP00000000810	ENSSSAP00000079966	ENSSSAP00000000810	ENSSSAP00000079966	annotation not available	annotation not available	0.969
ENSSSAP00000000810	FANCA	ENSSSAP00000000810	ENSSSAP00000038031	annotation not available	Fanconi anemia group A protein isoform X4.	0.852
ENSSSAP00000000810	LOC106607888	ENSSSAP00000000810	ENSSSAP00000005863	annotation not available	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.758
ENSSSAP00000000810	dclre1a	ENSSSAP00000000810	ENSSSAP00000086774	annotation not available	DNA cross-link repair 1A protein.	0.855
ENSSSAP00000000810	dclre1b	ENSSSAP00000000810	ENSSSAP00000068491	annotation not available	5' exonuclease Apollo isoform X1.	0.856
ENSSSAP00000000810	ercc1	ENSSSAP00000000810	ENSSSAP00000102627	annotation not available	DNA excision repair protein ERCC-1.	0.985
ENSSSAP00000000810	ercc4	ENSSSAP00000000810	ENSSSAP00000037552	annotation not available	DNA repair endonuclease XPF.	0.986
ENSSSAP00000000810	faap24	ENSSSAP00000000810	ENSSSAP00000057833	annotation not available	Fanconi anemia-associated protein of 24 kDa.	0.920
ENSSSAP00000000810	fan1	ENSSSAP00000000810	ENSSSAP00000089706	annotation not available	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.833
ENSSSAP00000000810	fancb	ENSSSAP00000000810	ENSSSAP00000048561	annotation not available	Fanconi anemia group B protein isoform X3.	0.851
ENSSSAP00000000810	fancc	ENSSSAP00000000810	ENSSSAP00000068223	annotation not available	Fanconi anemia group C protein isoform X1.	0.793
ENSSSAP00000000810	fancd2	ENSSSAP00000000810	ENSSSAP00000118850	annotation not available	Fanconi anemia group D2 protein.	0.887
ENSSSAP00000000810	fancg	ENSSSAP00000000810	ENSSSAP00000099962	annotation not available	Fanconi anemia group G protein isoform X3.	0.794
ENSSSAP00000000810	fancl	ENSSSAP00000000810	ENSSSAP00000110572	annotation not available	E3 ubiquitin-protein ligase FANCL isoform X1.	0.850
ENSSSAP00000000810	neil3	ENSSSAP00000000810	ENSSSAP00000100640	annotation not available	Endonuclease 8-like 3.	0.548
ENSSSAP00000000810	rad51	ENSSSAP00000000810	ENSSSAP00000042073	annotation not available	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.758
ENSSSAP00000000810	rad51d	ENSSSAP00000000810	ENSSSAP00000036812	annotation not available	DNA repair protein RAD51 homolog 4.	0.651
ENSSSAP00000005631	ENSSSAP00000042990	ENSSSAP00000005631	ENSSSAP00000042990	annotation not available	annotation not available	0.989
ENSSSAP00000005631	ENSSSAP00000079966	ENSSSAP00000005631	ENSSSAP00000079966	annotation not available	annotation not available	0.980