20 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106570244	Brachyury protein homolog A-like. (429 aa)
	LOC106585563	Fibroblast growth factor receptor. (847 aa)
	dkk1-2	Salmo salar Dickkopf-related protein 1 (dkk1), mRNA. (294 aa)
	LOC106577088	Dickkopf-related protein 1-like. (246 aa)
	LOC106563125	POU domain protein. (508 aa)
	LOC106579865	Fibroblast growth factor receptor 1-A-like. (849 aa)
	LOC106608700	Dickkopf-related protein 1-like. (244 aa)
	LOC106580010	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (214 aa)
	LOC106571739	Bone morphogenetic protein 2-like. (426 aa)
	bmp2	Bone morphogenetic protein 2 precursor. (422 aa)
	LOC106589228	Dickkopf-related protein 1-like. (246 aa)
	LOC106576696	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (257 aa)
	LOC106606274	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (213 aa)
	NOTCH1	Neurogenic locus notch homolog protein 1-like isoform X1. (2522 aa)
	LOC106573785	Uncharacterized protein LOC106573785. (279 aa)
	LOC106588610	Brachyury protein homolog A. (423 aa)
	dkk1	Dickkopf-related protein 1 isoform X1. (294 aa)
	LOC106560538	Neurogenic locus notch homolog protein 1-like isoform X1. (2489 aa)
	LOC106579992	Neurogenic locus notch homolog protein 1-like isoform X1. (2523 aa)
	LOC106567323	POU domain protein. (467 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563125	LOC106570244	ENSSSAP00000115688	ENSSSAP00000009858	POU domain protein.	Brachyury protein homolog A-like.	0.650
LOC106563125	LOC106580010	ENSSSAP00000115688	ENSSSAP00000099681	POU domain protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.453
LOC106563125	LOC106588610	ENSSSAP00000115688	ENSSSAP00000040673	POU domain protein.	Brachyury protein homolog A.	0.650
LOC106567323	LOC106570244	ENSSSAP00000007858	ENSSSAP00000009858	POU domain protein.	Brachyury protein homolog A-like.	0.650
LOC106567323	LOC106580010	ENSSSAP00000007858	ENSSSAP00000099681	POU domain protein.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.453
LOC106567323	LOC106588610	ENSSSAP00000007858	ENSSSAP00000040673	POU domain protein.	Brachyury protein homolog A.	0.650
LOC106570244	LOC106563125	ENSSSAP00000009858	ENSSSAP00000115688	Brachyury protein homolog A-like.	POU domain protein.	0.650
LOC106570244	LOC106567323	ENSSSAP00000009858	ENSSSAP00000007858	Brachyury protein homolog A-like.	POU domain protein.	0.650
LOC106570244	LOC106571739	ENSSSAP00000009858	ENSSSAP00000095002	Brachyury protein homolog A-like.	Bone morphogenetic protein 2-like.	0.422
LOC106570244	LOC106576696	ENSSSAP00000009858	ENSSSAP00000087712	Brachyury protein homolog A-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.505
LOC106570244	LOC106606274	ENSSSAP00000009858	ENSSSAP00000083733	Brachyury protein homolog A-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.505
LOC106570244	bmp2	ENSSSAP00000009858	ENSSSAP00000089322	Brachyury protein homolog A-like.	Bone morphogenetic protein 2 precursor.	0.422
LOC106571739	LOC106570244	ENSSSAP00000095002	ENSSSAP00000009858	Bone morphogenetic protein 2-like.	Brachyury protein homolog A-like.	0.422
LOC106571739	LOC106588610	ENSSSAP00000095002	ENSSSAP00000040673	Bone morphogenetic protein 2-like.	Brachyury protein homolog A.	0.422
LOC106576696	LOC106570244	ENSSSAP00000087712	ENSSSAP00000009858	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Brachyury protein homolog A-like.	0.505
LOC106576696	LOC106579865	ENSSSAP00000087712	ENSSSAP00000118615	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor 1-A-like.	0.851
LOC106576696	LOC106580010	ENSSSAP00000087712	ENSSSAP00000099681	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.525
LOC106576696	LOC106585563	ENSSSAP00000087712	ENSSSAP00000106276	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor receptor.	0.945
LOC106576696	LOC106588610	ENSSSAP00000087712	ENSSSAP00000040673	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Brachyury protein homolog A.	0.505
LOC106579865	LOC106576696	ENSSSAP00000118615	ENSSSAP00000087712	Fibroblast growth factor receptor 1-A-like.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.851