24 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106567451	Neuron-specific protein family member 2-like. (182 aa)
	LOC106585381-2	Lysosome membrane protein 2-like. (532 aa)
	LOC106603869	Neuron-specific protein family member 2-like. (182 aa)
	ENSSSAP00000068411	annotation not available (456 aa)
	TNFL6	Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family. (355 aa)
	nsg1	Neuron-specific protein family member 1. (182 aa)
	LOC106613961	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family. (269 aa)
	rnt2	Ribonuclease T2 precursor; Belongs to the RNase T2 family. (261 aa)
	PDGFRB-2	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1096 aa)
	LOC106568636	Mammalian ependymin-related protein 1-like. (214 aa)
	ncan	Neurocan core protein. (1440 aa)
	LOC106565203	Neuron-specific protein family member 1-like. (182 aa)
	LOC106589819	Ribonuclease T2-like isoform X1; Belongs to the RNase T2 family. (243 aa)
	LOC106612524	Ribonuclease T2-like; Belongs to the RNase T2 family. (239 aa)
	LOC106569686	Neurocan core protein-like. (1277 aa)
	LOC106580040	Lysosome membrane protein 2-like isoform X1; Belongs to the CD36 family. (532 aa)
	LOC106611876	Platelet-derived growth factor receptor beta-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1094 aa)
	PDGFRB	Platelet-derived growth factor receptor beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1109 aa)
	LOC106613725	Neurocan core protein-like. (1379 aa)
	scarb2	Lysosome membrane protein 2; Belongs to the CD36 family. (237 aa)
	LOC106600559	Neurocan core protein-like. (1159 aa)
	LOC106585381	Lysosome membrane protein 2-like; Belongs to the CD36 family. (532 aa)
	LOC106570060	Sialidase-1-like. (390 aa)
	LOC106588520	Sialidase-1-like. (390 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106570060	LOC106588520	ENSSSAP00000098462	ENSSSAP00000099169	Sialidase-1-like.	Sialidase-1-like.	0.900
LOC106588520	LOC106570060	ENSSSAP00000099169	ENSSSAP00000098462	Sialidase-1-like.	Sialidase-1-like.	0.900
LOC106613961	TNFL6	ENSSSAP00000056750	ENSSSAP00000062683	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.	Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family.	0.901
TNFL6	LOC106613961	ENSSSAP00000062683	ENSSSAP00000056750	Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family.	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.	0.901