42 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106604553	SAM and SH3 domain-containing protein 3-like. (399 aa)
	LOC106613687	Mucosa-associated lymphoid tissue lymphoma translocation protein 1 homolog. (860 aa)
	sash3	SAM and SH3 domain-containing protein 3. (400 aa)
	LOC106573951	Roquin-1-like isoform X1. (960 aa)
	ENSSSAP00000018109	NF-kappa-B inhibitor zeta-like. (401 aa)
	zc3h12a	Ribonuclease ZC3H12A. (615 aa)
	LOC106599427	Suppressor of cytokine signaling 1-like. (200 aa)
	tbx21	T-box transcription factor TBX21 isoform X1. (612 aa)
	LOC106568378	Roquin-2-like isoform X1. (1235 aa)
	hlx	H2.0-like homeobox protein isoform X1. (366 aa)
	LOC106578294	NF-kappa-B inhibitor delta-like isoform X1. (487 aa)
	LOC106568923	Roquin-1-like isoform X2. (1085 aa)
	LOC106613585	Roquin-1-like isoform X1. (1057 aa)
	LOC106574873	NF-kappa-B inhibitor zeta-like. (420 aa)
	LOC106583205	Ribonuclease ZC3H12A-like. (671 aa)
	LOC106561687	Roquin-2-like isoform X1. (1099 aa)
	RIPK2	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1. (587 aa)
	LOC106563704	LOW QUALITY PROTEIN: cytokine receptor common subunit gamma-like. (326 aa)
	LOC106587145	Receptor-interacting serine/threonine-protein kinase 2-like. (528 aa)
	myb	Transcriptional activator Myb. (561 aa)
	ENSSSAP00000061928	annotation not available (367 aa)
	LOC100136479	CD83 antigen isoform X2. (229 aa)
	LOC106581291	CD83 antigen-like. (217 aa)
	LOC106573489	Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like. (698 aa)
	LOC106560844	Core-binding factor subunit beta-like. (197 aa)
	LOC106571071	Transcriptional activator Myb-like. (526 aa)
	LOC106607589	H2.0-like homeobox protein isoform X1. (370 aa)
	LOC106589020	Ribonuclease ZC3H12A-like. (700 aa)
	LOC106589292	Eomesodermin-like isoform X1. (624 aa)
	LOC106562048	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2. (541 aa)
	LOC106560245	E3 ubiquitin-protein ligase SH3RF1-like isoform X1. (877 aa)
	LOC106573726	Core-binding factor subunit beta isoform X1. (198 aa)
	LOC106585388	Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X1. (816 aa)
	LOC106605117	Ribonuclease ZC3H12A-like. (662 aa)
	LOC106599087	Roquin-1-like isoform X1. (1425 aa)
	LOC106584225	E3 ubiquitin-protein ligase SH3RF1-like. (880 aa)
	LOC106561168	Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like. (675 aa)
	LOC106585388-2	Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like. (816 aa)
	LOC106584517	H-2 class II histocompatibility antigen, A-U alpha chain-like. (279 aa)
	LOC106570861	C-C motif chemokine. (124 aa)
	CCL19	C-C motif chemokine. (122 aa)
	LOC106568754	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1. (598 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000018109	LOC106583205	ENSSSAP00000018109	ENSSSAP00000045547	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
ENSSSAP00000018109	LOC106589020	ENSSSAP00000018109	ENSSSAP00000076730	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
ENSSSAP00000018109	LOC106605117	ENSSSAP00000018109	ENSSSAP00000089421	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
ENSSSAP00000018109	zc3h12a	ENSSSAP00000018109	ENSSSAP00000019214	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A.	0.423
LOC106561687	LOC106568923	ENSSSAP00000050094	ENSSSAP00000031384	Roquin-2-like isoform X1.	Roquin-1-like isoform X2.	0.610
LOC106561687	LOC106573951	ENSSSAP00000050094	ENSSSAP00000017022	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.614
LOC106561687	LOC106599087	ENSSSAP00000050094	ENSSSAP00000007138	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.610
LOC106561687	LOC106613585	ENSSSAP00000050094	ENSSSAP00000038269	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.610
LOC106568378	LOC106568923	ENSSSAP00000026563	ENSSSAP00000031384	Roquin-2-like isoform X1.	Roquin-1-like isoform X2.	0.614
LOC106568378	LOC106573951	ENSSSAP00000026563	ENSSSAP00000017022	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.619
LOC106568378	LOC106599087	ENSSSAP00000026563	ENSSSAP00000007138	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.617
LOC106568378	LOC106613585	ENSSSAP00000026563	ENSSSAP00000038269	Roquin-2-like isoform X1.	Roquin-1-like isoform X1.	0.613
LOC106568923	LOC106561687	ENSSSAP00000031384	ENSSSAP00000050094	Roquin-1-like isoform X2.	Roquin-2-like isoform X1.	0.610
LOC106568923	LOC106568378	ENSSSAP00000031384	ENSSSAP00000026563	Roquin-1-like isoform X2.	Roquin-2-like isoform X1.	0.614
LOC106573951	LOC106561687	ENSSSAP00000017022	ENSSSAP00000050094	Roquin-1-like isoform X1.	Roquin-2-like isoform X1.	0.614
LOC106573951	LOC106568378	ENSSSAP00000017022	ENSSSAP00000026563	Roquin-1-like isoform X1.	Roquin-2-like isoform X1.	0.619
LOC106574873	LOC106583205	ENSSSAP00000044224	ENSSSAP00000045547	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
LOC106574873	LOC106589020	ENSSSAP00000044224	ENSSSAP00000076730	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
LOC106574873	LOC106605117	ENSSSAP00000044224	ENSSSAP00000089421	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A-like.	0.423
LOC106574873	zc3h12a	ENSSSAP00000044224	ENSSSAP00000019214	NF-kappa-B inhibitor zeta-like.	Ribonuclease ZC3H12A.	0.423