30 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106589490	Dual specificity mitogen-activated protein kinase kinase 4-like isoform X1; Belongs to the protein kinase superfamily. (426 aa)
	LOC106564723	Dual specificity mitogen-activated protein kinase kinase 7-like isoform X2. (441 aa)
	nfatc4	Nuclear factor of activated T-cells, cytoplasmic 4. (891 aa)
	LOC106601126	Apoptosis regulator BAX-like. (225 aa)
	LOC106566144	Uncharacterized protein LOC106566144. (427 aa)
	atm	Non-specific serine/threonine protein kinase. (3172 aa)
	rapsn	43 kDa receptor-associated protein of the synapse isoform X1. (389 aa)
	LOC106569348	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	map2k4	Dual specificity mitogen-activated protein kinase kinase 4 isoform X2; Belongs to the protein kinase superfamily. (431 aa)
	LOC106604392	Transforming growth factor beta; Belongs to the TGF-beta family. (433 aa)
	LOC106613084	Neurofibromin-like isoform X5. (2779 aa)
	LOC106603288	Neurofibromin-like isoform X2. (2801 aa)
	LOC106608126	Bcl-2-like protein 11. (214 aa)
	LOC106612106	Transforming growth factor beta; Belongs to the TGF-beta family. (425 aa)
	NFATC4	Nuclear factor of activated T-cells, cytoplasmic 4-like isoform X2. (891 aa)
	LOC106582666	DNA damage-inducible transcript 3 protein-like. (300 aa)
	LOC106607328	Apoptosis regulator BAX-like. (194 aa)
	LOC106578855	Dual specificity mitogen-activated protein kinase kinase 4-like. (437 aa)
	ENSSSAP00000105257	Serine-protein kinase ATM-like. (111 aa)
	LOC106567758	Neurofibromin isoform X6. (2773 aa)
	Bcl2l11	Bcl-2-like protein 11. (155 aa)
	ENSSSAP00000073552	annotation not available (175 aa)
	LOC100380682	Protein CDV3 homolog. (303 aa)
	LOC106605021	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	LOC106587435	Dual specificity mitogen-activated protein kinase kinase 7-like isoform X1. (440 aa)
	LOC106584161	Transforming growth factor beta; Belongs to the TGF-beta family. (411 aa)
	aifm1	Apoptosis-inducing factor 1, mitochondrial isoform X1. (810 aa)
	casp9	Caspase-9 isoform X1; Belongs to the peptidase C14A family. (450 aa)
	LOC106567147	Caspase-9-like; Belongs to the peptidase C14A family. (456 aa)
	LOC106569348-2	Cyclin-dependent-like kinase 5. (292 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcl2l11	ENSSSAP00000073552	ENSSSAP00000102692	ENSSSAP00000073552	Bcl-2-like protein 11.	annotation not available	0.844
Bcl2l11	LOC106566144	ENSSSAP00000102692	ENSSSAP00000044847	Bcl-2-like protein 11.	Uncharacterized protein LOC106566144.	0.574
Bcl2l11	LOC106567147	ENSSSAP00000102692	ENSSSAP00000099548	Bcl-2-like protein 11.	Caspase-9-like; Belongs to the peptidase C14A family.	0.512
Bcl2l11	LOC106582666	ENSSSAP00000102692	ENSSSAP00000073254	Bcl-2-like protein 11.	DNA damage-inducible transcript 3 protein-like.	0.574
Bcl2l11	LOC106601126	ENSSSAP00000102692	ENSSSAP00000025308	Bcl-2-like protein 11.	Apoptosis regulator BAX-like.	0.983
Bcl2l11	LOC106607328	ENSSSAP00000102692	ENSSSAP00000073537	Bcl-2-like protein 11.	Apoptosis regulator BAX-like.	0.983
Bcl2l11	LOC106608126	ENSSSAP00000102692	ENSSSAP00000066497	Bcl-2-like protein 11.	Bcl-2-like protein 11.	0.901
Bcl2l11	casp9	ENSSSAP00000102692	ENSSSAP00000098797	Bcl-2-like protein 11.	Caspase-9 isoform X1; Belongs to the peptidase C14A family.	0.512
ENSSSAP00000073552	Bcl2l11	ENSSSAP00000073552	ENSSSAP00000102692	annotation not available	Bcl-2-like protein 11.	0.844
ENSSSAP00000073552	LOC106567147	ENSSSAP00000073552	ENSSSAP00000099548	annotation not available	Caspase-9-like; Belongs to the peptidase C14A family.	0.470
ENSSSAP00000073552	LOC106608126	ENSSSAP00000073552	ENSSSAP00000066497	annotation not available	Bcl-2-like protein 11.	0.844
ENSSSAP00000073552	casp9	ENSSSAP00000073552	ENSSSAP00000098797	annotation not available	Caspase-9 isoform X1; Belongs to the peptidase C14A family.	0.470
ENSSSAP00000105257	LOC106567758	ENSSSAP00000105257	ENSSSAP00000103317	Serine-protein kinase ATM-like.	Neurofibromin isoform X6.	0.430
ENSSSAP00000105257	LOC106603288	ENSSSAP00000105257	ENSSSAP00000063392	Serine-protein kinase ATM-like.	Neurofibromin-like isoform X2.	0.430
ENSSSAP00000105257	LOC106613084	ENSSSAP00000105257	ENSSSAP00000062149	Serine-protein kinase ATM-like.	Neurofibromin-like isoform X5.	0.430
LOC106564723	LOC106578855	ENSSSAP00000009817	ENSSSAP00000106176	Dual specificity mitogen-activated protein kinase kinase 7-like isoform X2.	Dual specificity mitogen-activated protein kinase kinase 4-like.	0.786
LOC106564723	LOC106589490	ENSSSAP00000009817	ENSSSAP00000079126	Dual specificity mitogen-activated protein kinase kinase 7-like isoform X2.	Dual specificity mitogen-activated protein kinase kinase 4-like isoform X1; Belongs to the protein kinase superfamily.	0.786
LOC106564723	map2k4	ENSSSAP00000009817	ENSSSAP00000051754	Dual specificity mitogen-activated protein kinase kinase 7-like isoform X2.	Dual specificity mitogen-activated protein kinase kinase 4 isoform X2; Belongs to the protein kinase superfamily.	0.781
LOC106566144	Bcl2l11	ENSSSAP00000044847	ENSSSAP00000102692	Uncharacterized protein LOC106566144.	Bcl-2-like protein 11.	0.574
LOC106566144	LOC106608126	ENSSSAP00000044847	ENSSSAP00000066497	Uncharacterized protein LOC106566144.	Bcl-2-like protein 11.	0.574